{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,26]],"date-time":"2025-10-26T14:35:19Z","timestamp":1761489319545},"reference-count":23,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"2","license":[{"start":{"date-parts":[[2014,3,1]],"date-time":"2014-03-01T00:00:00Z","timestamp":1393632000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2014,3]]},"DOI":"10.1109\/tcbb.2014.2306831","type":"journal-article","created":{"date-parts":[[2014,2,19]],"date-time":"2014-02-19T19:08:46Z","timestamp":1392836926000},"page":"398-406","source":"Crossref","is-referenced-by-count":5,"title":["Optimizing Spaced <formula formulatype=\"inline\"><tex Notation=\"TeX\">$k$<\/tex><\/formula>-mer Neighbors for Efficient Filtration in Protein Similarity Search"],"prefix":"10.1109","volume":"11","author":[{"family":"Weiming Li","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"family":"Bin Ma","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"family":"Kaizhong Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp486"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"10915","DOI":"10.1073\/pnas.89.22.10915","article-title":"Amino Acid Substitution Matrices from Protein Blocks","volume":"89","author":"henikoff","year":"1992","journal-title":"Proc Nat?l Academy of Sciences USA"},{"key":"ref12","first-page":"345","article-title":"A Model of Evolutionary Change in Proteins","volume":"5","author":"dayhoff","year":"1978","journal-title":"Atlas of Protein Sequence and Structure"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-00727-9_6"},{"key":"ref14","first-page":"149","article-title":"Subset Seed Extension to Protein Blast","author":"gambin","year":"2011","journal-title":"Proc Int?l Conf Bioinformatics Models Methods and Algorithms"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/S0166-218X(03)00382-2"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1145\/1109557.1109607"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-68279-0_8"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/SIS.2003.1202239"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkl842"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1142\/S0219720004000661","article-title":"Patternhunter II: Highly Sensitive and Fast Homology Search","volume":"2","author":"ming","year":"2004","journal-title":"J Bioinformatics and Computational Biology"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/18.3.440"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1016\/j.jcss.2004.12.008"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-30219-3_15"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btn416"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1142\/S0219720004000983"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.1990.9999"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr046"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr981"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1109\/BIBM.2012.6392695"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/6.4.373"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn734"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/6819503\/06744614.pdf?arnumber=6744614","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,12]],"date-time":"2022-01-12T16:20:24Z","timestamp":1642004424000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/6744614\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,3]]},"references-count":23,"journal-issue":{"issue":"2"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2014.2306831","relation":{},"ISSN":["1545-5963"],"issn-type":[{"value":"1545-5963","type":"print"}],"subject":[],"published":{"date-parts":[[2014,3]]}}}