{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,6]],"date-time":"2026-06-06T16:55:18Z","timestamp":1780764918987,"version":"3.54.1"},"reference-count":48,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"5","license":[{"start":{"date-parts":[[2014,9,1]],"date-time":"2014-09-01T00:00:00Z","timestamp":1409529600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2014,9,1]],"date-time":"2014-09-01T00:00:00Z","timestamp":1409529600000},"content-version":"am","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2014,9,1]],"date-time":"2014-09-01T00:00:00Z","timestamp":1409529600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2014,9,1]],"date-time":"2014-09-01T00:00:00Z","timestamp":1409529600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/100000001","name":"US National Science Foundation (NSF)","doi-asserted-by":"publisher","award":["IIS0746930"],"award-info":[{"award-number":["IIS0746930"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"US National Science Foundation (NSF)","doi-asserted-by":"publisher","award":["CCF0937094"],"award-info":[{"award-number":["CCF0937094"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"US National Science Foundation (NSF)","doi-asserted-by":"publisher","award":["IIS1218488"],"award-info":[{"award-number":["IIS1218488"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"US National Science Foundation (NSF)","doi-asserted-by":"publisher","award":["DBI1147144"],"award-info":[{"award-number":["DBI1147144"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2014,9,1]]},"DOI":"10.1109\/tcbb.2014.2325031","type":"journal-article","created":{"date-parts":[[2014,5,16]],"date-time":"2014-05-16T18:05:29Z","timestamp":1400263529000},"page":"775-787","source":"Crossref","is-referenced-by-count":98,"title":["Network-Based Drug-Target Interaction Prediction with Probabilistic Soft Logic"],"prefix":"10.1109","volume":"11","author":[{"given":"Shobeir","family":"Fakhraei","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bert","family":"Huang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Louiqa","family":"Raschid","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lise","family":"Getoor","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"crossref","first-page":"919d","DOI":"10.1093\/nar\/gkm862","article-title":"Supertarget and matador: Resources for exploring drug-target relationships","volume":"36","author":"g\u00fcnther","year":"2008","journal-title":"Nucl Acids Res"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp697"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.14778\/1920841.1920904"},{"key":"ref32","first-page":"267","article-title":"The field matching problem: Algorithms and applications","author":"monge","year":"1996","journal-title":"Proc Int Conf Knowl Disc Data Mining"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1109\/ICDM.2006.65"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.3115\/1118693.1118694"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkp896"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"901d","DOI":"10.1093\/nar\/gkm958","article-title":"Drugbank: A knowledgebase for drugs, drug actions and drug targets","volume":"36","author":"wishart","year":"2008","journal-title":"Nucl Acids Res"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1609\/aimag.v29i3.2157","article-title":"Collective classification in network data","volume":"29","author":"sen","year":"2008","journal-title":"AI Mag"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1145\/1559845.1559870"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.physa.2010.11.027"},{"key":"ref40","author":"hansen","year":"2010","journal-title":"Analyzing Social Media Networks with NodeXL Insights from a Connected World"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btn162"},{"key":"ref12","first-page":"73","article-title":"Probabilistic similarity logic","author":"broecheler","year":"2010","journal-title":"Proc Conf Uncertainty of Artificial Intelligence"},{"key":"ref13","article-title":"A short introduction to probabilistic soft logic","author":"kimmig","year":"2012","journal-title":"Proc NIPS Workshop Probabilistic Programm Found Appl"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1145\/2500863.2500870"},{"key":"ref15","article-title":"Collective inference and multi-relational learning for drug-target interaction prediction","author":"fakhraei","year":"2013","journal-title":"Proc NIPS Workshop Mach Learn Comput Biol"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1038\/nrc2044"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"1929","DOI":"10.1126\/science.1132939","article-title":"The connectivity map: Using gene-expression signatures to connect small molecules, genes, and disease","volume":"313","author":"lamb","year":"2006","journal-title":"Sciences"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2011.18"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002300"},{"key":"ref28","first-page":"2663","article-title":"Scaling MPE inference for constrained continuous Markov random fields with consensus optimization","author":"bach","year":"2012","journal-title":"Proc Adv Neural Inf Process Syst"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/nature08506"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1038\/msb.2011.26","article-title":"PREDICT: A method for inferring novel drug indications with application to personalized medicine","volume":"7","author":"gottlieb","year":"2011","journal-title":"Mol Syst Biol"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1515\/jib-2010-116","article-title":"An integrated dataset for in silico drug discovery","volume":"7","author":"cockell","year":"2010","journal-title":"Journal of Integrative Bioinformatics"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"1119","DOI":"10.1038\/nbt1338","article-title":"Drug&#x2013;target network","volume":"25","author":"yildirim","year":"2007","journal-title":"Nat Biotechnol"},{"key":"ref29","article-title":"Hinge-loss Markov random fields: Convex inference for structured prediction","author":"bach","year":"2013","journal-title":"Proc Uncertainty Artificial Intelligence"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbt056"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2010.0213"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1517\/17460440903322234"},{"key":"ref2","first-page":"297","article-title":"Systems approaches to polypharmacology and drug discovery","volume":"13","author":"boran","year":"2010","journal-title":"Curr Opin Drug Discov Devel"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1145\/1117454.1117456"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tips.2012.02.001"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1109\/ASONAM.2012.68"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002503"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-136"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1145\/1143844.1143874"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt307"},{"key":"ref47","first-page":"1","article-title":"ROC graphs: Notes and practical considerations for researchers","volume":"31","author":"fawcett","year":"2004","journal-title":"Mach Learn"},{"key":"ref21","first-page":"144","article-title":"Heuristics for chemical compound matching","volume":"14","author":"hattori","year":"2003","journal-title":"Genome Informatics Series"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1038\/msb.2009.98"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts670"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.2174\/138161206777585274"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp433"},{"key":"ref44","year":"0"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002574"},{"key":"ref43","first-page":"138","article-title":"Classification of drugs using the ATC system (anatomic, therapeutic, chemical classification) and the latest changes","volume":"58","author":"skrbo","year":"2004","journal-title":"Medicinski Arhiv"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt234"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/ieeexplore.ieee.org\/ielaam\/8857\/6917081\/6817596-aam.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/6917081\/06817596.pdf?arnumber=6817596","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,4,8]],"date-time":"2022-04-08T18:51:28Z","timestamp":1649443888000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/6817596\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,9,1]]},"references-count":48,"journal-issue":{"issue":"5"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2014.2325031","relation":{},"ISSN":["1545-5963"],"issn-type":[{"value":"1545-5963","type":"print"}],"subject":[],"published":{"date-parts":[[2014,9,1]]}}}