{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T12:23:45Z","timestamp":1740140625799,"version":"3.37.3"},"reference-count":44,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"2","license":[{"start":{"date-parts":[[2015,3,1]],"date-time":"2015-03-01T00:00:00Z","timestamp":1425168000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"DOI":"10.13039\/100000001","name":"NSF","doi-asserted-by":"publisher","award":["DBI-1053024"],"award-info":[{"award-number":["DBI-1053024"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"NSF","doi-asserted-by":"publisher","award":["DBI-084519","IOS-1126992"],"award-info":[{"award-number":["DBI-084519","IOS-1126992"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"NSF","doi-asserted-by":"publisher","award":["IOS-1126992"],"award-info":[{"award-number":["IOS-1126992"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Stamps Foundation"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2015,3]]},"DOI":"10.1109\/tcbb.2014.2355208","type":"journal-article","created":{"date-parts":[[2014,9,10]],"date-time":"2014-09-10T14:44:25Z","timestamp":1410360265000},"page":"298-308","source":"Crossref","is-referenced-by-count":0,"title":["An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites"],"prefix":"10.1109","volume":"12","author":[{"given":"Bin","family":"Pang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Schlessman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xingyan","family":"Kuang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nan","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9197-9522","authenticated-orcid":false,"given":"Daniel","family":"Shyu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dmitry","family":"Korkin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chi-Ren","family":"Shyu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1016\/S0969-2126(00)88341-0"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1021\/bi951732k"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkj099"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(05)80134-2"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.0040010"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1002\/pro.5560070226"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.2000.4374"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2004.12.032"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0906146106"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-398"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.sbi.2009.04.003"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts138"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq404"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-30219-3_17"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0001926"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2011.42"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq100"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btn432"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-488"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1186\/1472-6807-8-45"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-0282(199603)38:3<305::AID-BIP4>3.0.CO;2-Y"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1145\/361002.361007"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr1128"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1016\/j.tcs.2006.06.015"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1016\/j.str.2011.04.006"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1080\/07391102.2012.743438"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1016\/j.str.2007.01.007"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1021\/pr400006k"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1142\/S0219720008003461"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt024"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr493"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1119684109"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1007\/s00018-007-7451-x"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/34.625113"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1145\/362342.362367"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-32"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks527"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gki524"},{"key":"ref41","volume":"174","author":"garey","year":"1979","journal-title":"Computers and Intractability"},{"key":"ref23","article-title":"Method for registration of 3-D shapes","author":"besl","year":"0","journal-title":"IEEE Trans Pattern Anal Mach Intell"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1145\/1327452.1327492"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1107\/S0907444904026460"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1186\/1756-0500-5-116"},{"key":"ref25","first-page":"5","article-title":"An improved branch and bound algorithm for the maximum clique problem","volume":"4","author":"konc","year":"2007","journal-title":"Proteins"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/7080960\/06895161.pdf?arnumber=6895161","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,12]],"date-time":"2022-01-12T11:42:21Z","timestamp":1641987741000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/6895161\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,3]]},"references-count":44,"journal-issue":{"issue":"2"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2014.2355208","relation":{},"ISSN":["1545-5963"],"issn-type":[{"type":"print","value":"1545-5963"}],"subject":[],"published":{"date-parts":[[2015,3]]}}}