{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,6]],"date-time":"2026-05-06T07:56:35Z","timestamp":1778054195752,"version":"3.51.4"},"reference-count":34,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"5","license":[{"start":{"date-parts":[[2015,9,1]],"date-time":"2015-09-01T00:00:00Z","timestamp":1441065600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"name":"US National Science Foundation","award":["0905509"],"award-info":[{"award-number":["0905509"]}]},{"name":"US National Science Foundation","award":["0811416"],"award-info":[{"award-number":["0811416"]}]},{"DOI":"10.13039\/100000002","name":"NIH","doi-asserted-by":"publisher","award":["AI85077-01A1"],"award-info":[{"award-number":["AI85077-01A1"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"name":"US National Science Foundation","award":["DBI-1062301"],"award-info":[{"award-number":["DBI-1062301"]}]},{"name":"US National Science Foundation","award":["IIS-1302134"],"award-info":[{"award-number":["IIS-1302134"]}]},{"DOI":"10.13039\/100006602","name":"AFRL","doi-asserted-by":"publisher","award":["FA9453-09-C-0173"],"award-info":[{"award-number":["FA9453-09-C-0173"]}],"id":[{"id":"10.13039\/100006602","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2015,9,1]]},"DOI":"10.1109\/tcbb.2015.2405333","type":"journal-article","created":{"date-parts":[[2015,2,24]],"date-time":"2015-02-24T19:46:50Z","timestamp":1424807210000},"page":"973-981","source":"Crossref","is-referenced-by-count":39,"title":["&lt;sc&gt;FHAST&lt;\/sc&gt;: FPGA-Based Acceleration of &lt;sc&gt;Bowtie&lt;\/sc&gt; in Hardware"],"prefix":"10.1109","volume":"12","author":[{"given":"Edward B.","family":"Fernandez","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jason","family":"Villarreal","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stefano","family":"Lonardi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Walid A.","family":"Najjar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts061"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2012.49"},{"key":"ref31","first-page":"670","author":"xin","year":"0"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1109\/FPT.2013.6718408"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1109\/MDAT.2013.2293757"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2009-10-3-r25"},{"key":"ref11","first-page":"319","author":"manber","year":"0","journal-title":"Proc 1st Ann ACM-SIAM Symp Discrete Algorithms"},{"key":"ref12","author":"salzberg","year":"0"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1109\/FPGA.1993.279464"},{"key":"ref14","first-page":"195","year":"0"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1145\/968280.968325"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1109\/FPL.2006.311337"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1109\/TVLSI.2008.2005314"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/FPL.2008.4630032"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1145\/1328554.1328565"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2014.2326876"},{"key":"ref4","first-page":"1","article-title":"The tera computer system","author":"alverson","year":"0","journal-title":"Proc 4th Int Conf Supercomput"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1109\/FCCM.2012.39"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1145\/143369.143408"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/SFCS.2000.892127"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1109\/FCCM.2013.57"},{"key":"ref5","first-page":"28","article-title":"Eldorado","author":"feo","year":"0","journal-title":"Proc 2nd Conf Comput Frontiers"},{"key":"ref8","year":"0"},{"key":"ref7","first-page":"269","article-title":"An experimental study of an opportunistic index","author":"ferragina","year":"0","journal-title":"Proc ACM-SIAM Ann Symp Discrete Algorithms"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1109\/MSPEC.2013.6545119"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1109\/FPL.2010.78"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1109\/HPEC.2012.6408669"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/FCCM.2007.11"},{"key":"ref22","first-page":"333","author":"aho","year":"0"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1109\/FCCM.2006.64"},{"key":"ref24","author":"chen","year":"0"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-197"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/FCCM.2012.36"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1109\/ASAP.2011.6043268"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/7293246\/07047821.pdf?arnumber=7047821","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,12]],"date-time":"2022-01-12T15:56:55Z","timestamp":1642003015000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/7047821\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,9,1]]},"references-count":34,"journal-issue":{"issue":"5"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2015.2405333","relation":{},"ISSN":["1545-5963"],"issn-type":[{"value":"1545-5963","type":"print"}],"subject":[],"published":{"date-parts":[[2015,9,1]]}}}