{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T07:34:09Z","timestamp":1761896049319,"version":"3.37.3"},"reference-count":40,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"5","license":[{"start":{"date-parts":[[2015,9,1]],"date-time":"2015-09-01T00:00:00Z","timestamp":1441065600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"DOI":"10.13039\/501100001475","name":"Nanyang Technological University","doi-asserted-by":"publisher","award":["NTU Research Scholarship"],"award-info":[{"award-number":["NTU Research Scholarship"]}],"id":[{"id":"10.13039\/501100001475","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2015,9,1]]},"DOI":"10.1109\/tcbb.2015.2407574","type":"journal-article","created":{"date-parts":[[2015,2,26]],"date-time":"2015-02-26T19:43:49Z","timestamp":1424979829000},"page":"1060-1073","source":"Crossref","is-referenced-by-count":5,"title":["Efficient and Accurate OTU Clustering with GPU-Based Sequence Alignment and Dynamic Dendrogram Cutting"],"prefix":"10.1109","volume":"12","author":[{"family":"Thuy-Diem Nguyen","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bertil","family":"Schmidt","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"family":"Zejun Zheng","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"family":"Chee-Keong Kwoh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1361"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.2307\/2284239"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"5069","DOI":"10.1128\/AEM.03006-05","author":"desantis","year":"2006","journal-title":"Applied and Environmental Microbiology"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"94e","DOI":"10.1093\/nar\/gks251","author":"angly","year":"2012","journal-title":"Nucleic Acids Res"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1145\/1250734.1250746"},{"article-title":"ecp: An R package for nonparametric multiple change point analysis of multivariate data","year":"2013","author":"james","key":"ref30"},{"key":"ref37","first-page":"2837","article-title":"Information theoretic measures for clusterings comparison: variants, properties, normalization and correction for chance","volume":"11","author":"vinh","year":"2010","journal-title":"J Mach Learn Res"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"301","DOI":"10.1007\/s00357-006-0017-z","author":"albatineh","year":"2006","journal-title":"J Classification"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq365"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0024785"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2604"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1002355107"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"1658","DOI":"10.1093\/bioinformatics\/btl158","author":"li","year":"2006","journal-title":"Bioinformatics"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-24855-9_4"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"7537","DOI":"10.1128\/AEM.01541-09","author":"schloss","year":"2009","journal-title":"Applied and Environmental Microbiology"},{"journal-title":"Nucleic Acids Res","year":"2009","author":"sun","key":"ref14"},{"journal-title":"Nucleic Acids Res","year":"2011","author":"cai","key":"ref15"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","author":"edgar","year":"2004","journal-title":"Nucleic Acids Res"},{"journal-title":"Briefings in Bioinformatics","year":"0","author":"sun","key":"ref17"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1023\/A:1009783824328","author":"zhang","year":"1997","journal-title":"Data Mining Knowl Discovery"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511809071"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1080\/01621459.2012.737745"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"12115","DOI":"10.1073\/pnas.0605127103","author":"sogin","year":"2006","journal-title":"Proc Nat Acad Sci USA"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511574931"},{"journal-title":"Science Translational Medicine","year":"2009","author":"turnbaugh","key":"ref3"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"1141","DOI":"10.1101\/gr.085464.108","author":"hamady","year":"2009","journal-title":"Genome Res"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1093\/bioinformatics\/btq647","author":"muggeo","year":"2011","journal-title":"Bioinformatics"},{"journal-title":"Genome Biol","year":"2007","author":"huse","key":"ref5"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"1889","DOI":"10.1111\/j.1462-2920.2010.02193.x","author":"huse","year":"2010","journal-title":"Environmental Microbiology"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.f.303"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/nature07540"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"2460","DOI":"10.1093\/bioinformatics\/btq461","author":"edgar","year":"2010","journal-title":"Bioinformatics"},{"key":"ref1","doi-asserted-by":"crossref","first-page":"4532","DOI":"10.1128\/AEM.02956-06","author":"ashby","year":"2007","journal-title":"Applied and Environmental Microbiology"},{"journal-title":"Bioinformatics","year":"0","author":"hao","key":"ref20"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"2891","DOI":"10.1093\/bioinformatics\/bts552","author":"bonder","year":"2012","journal-title":"Bioinformatics"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1186\/1471-2105-14-43","author":"wang","year":"2013","journal-title":"BMC Bioinformat"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr381"},{"journal-title":"BMC Bioinformat","year":"2011","author":"quince","key":"ref23"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1016\/0022-2836(70)90057-4","author":"needleman","year":"1970","journal-title":"J Molecular Biol"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"380","DOI":"10.1093\/nar\/gkh180","author":"edgar","year":"2004","journal-title":"Nucleic Acids Res"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/7293246\/07050241.pdf?arnumber=7050241","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,12]],"date-time":"2022-01-12T15:56:54Z","timestamp":1642003014000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/7050241\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,9,1]]},"references-count":40,"journal-issue":{"issue":"5"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2015.2407574","relation":{},"ISSN":["1545-5963"],"issn-type":[{"type":"print","value":"1545-5963"}],"subject":[],"published":{"date-parts":[[2015,9,1]]}}}