{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,16]],"date-time":"2025-10-16T13:56:13Z","timestamp":1760622973034,"version":"3.37.3"},"reference-count":72,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"2","license":[{"start":{"date-parts":[[2016,3,1]],"date-time":"2016-03-01T00:00:00Z","timestamp":1456790400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/OAPA.html"}],"funder":[{"DOI":"10.13039\/100000002","name":"NIH","doi-asserted-by":"publisher","award":["R01 DE019244"],"award-info":[{"award-number":["R01 DE019244"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"NIH","doi-asserted-by":"publisher","award":["C06 RR015464"],"award-info":[{"award-number":["C06 RR015464"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100009790","name":"University at Albany","doi-asserted-by":"crossref","id":[{"id":"10.13039\/100009790","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100007258","name":"SUNY","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100007258","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2016,3,1]]},"DOI":"10.1109\/tcbb.2015.2452916","type":"journal-article","created":{"date-parts":[[2015,7,7]],"date-time":"2015-07-07T21:24:58Z","timestamp":1436304298000},"page":"350-364","source":"Crossref","is-referenced-by-count":10,"title":["Prediction of Growth Factor-Dependent Cleft Formation During Branching Morphogenesis Using A Dynamic Graph-Based Growth Model"],"prefix":"10.1109","volume":"13","author":[{"given":"Nimit","family":"Dhulekar","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shayoni","family":"Ray","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel","family":"Yuan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Abhirami","family":"Baskaran","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Basak","family":"Oztan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Melinda","family":"Larsen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bulent","family":"Yener","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref72","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti1100"},{"key":"ref71","doi-asserted-by":"publisher","DOI":"10.1016\/j.biomaterials.2012.01.010"},{"key":"ref70","doi-asserted-by":"publisher","DOI":"10.1109\/BIBM.2012.6392680"},{"journal-title":"Graph Theory","year":"2000","author":"diestel","key":"ref39"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1016\/S0149-1970(02)00002-1"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1007\/s10237-002-0001-4"},{"key":"ref32","first-page":"106","article-title":"Dynamic image-based modelling of kidney branching morphogenesis","author":"srivathsan","year":"2013","journal-title":"Proc 11th Int Conf Comput Methods Syst Biol"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2006.05.009"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1016\/j.ydbio.2009.09.024"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1003319"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRev.64.178"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1140\/epje\/i2011-11073-0"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1088\/1478-3975\/5\/1\/015005"},{"key":"ref60","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-0177(199906)215:2<148::AID-DVDY7>3.0.CO;2-V"},{"key":"ref62","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1109\/TSMC.1979.4310076","article-title":"A threshold selection method from gray-level histograms","volume":"9","author":"otsu","year":"1979","journal-title":"IEEE Trans Syst Man Cybern C"},{"key":"ref61","doi-asserted-by":"crossref","first-page":"298","DOI":"10.1016\/j.diff.2008.10.006","article-title":"EGF-receptor regulates salivary gland branching morphogenesis by supporting proliferation and maturation of epithelial cells and survival of mesenchymal cells","volume":"77","author":"h\u00e4\u00e4r\u00e4","year":"2009","journal-title":"Differentiation"},{"key":"ref63","doi-asserted-by":"publisher","DOI":"10.1016\/j.specom.2010.04.002"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000900"},{"key":"ref64","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bth933"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2007.02.019"},{"journal-title":"Clustering Algorithms","year":"1975","author":"hartigan","key":"ref65"},{"key":"ref66","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511809071"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1038\/nature07005"},{"key":"ref67","doi-asserted-by":"publisher","DOI":"10.1006\/jtbi.2000.1087"},{"key":"ref68","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000163"},{"key":"ref69","doi-asserted-by":"publisher","DOI":"10.1007\/BF02980577"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/S1534-5807(02)00410-0"},{"journal-title":"Branching Morphogenesis","year":"2004","author":"davies","key":"ref1"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1016\/S0960-9822(01)00167-1"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1098\/rstb.1952.0012"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1242\/dev.067512"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1126\/science.141.3579.401"},{"key":"ref23","first-page":"223","article-title":"A two-dimensional growth process","volume":"4","author":"eden","year":"1961","journal-title":"Proc 4th Berkeley Symp Math Statist Probability"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1093\/imammb\/1.1.51"},{"key":"ref25","first-page":"83","article-title":"Mechanical aspects of mesenchymal morphogenesis","volume":"78","author":"oster","year":"1983","journal-title":"J Embryol Exp Morphol"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1126\/science.1091317"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1126\/science.1075090"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-0177(199702)208:2<149::AID-AJA2>3.0.CO;2-I"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1109\/ISBI.2010.5490267"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1007\/s10618-009-0153-2"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0032906"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0012783"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"440","DOI":"10.1038\/30918","article-title":"Collective dynamics of &#x2018;small-world&#x2019; networks","volume":"393","author":"watts","year":"1998","journal-title":"Nature"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.1038\/nature02541"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMe078114"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/0012-1606(91)90419-4"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"2739","DOI":"10.1242\/dev.126.12.2739","article-title":"Targeted inactivation of the EGF and amphiregulin genes reveals distinct roles for EGF receptor ligands in mouse mammary gland development","volume":"126","author":"luetteke","year":"1999","journal-title":"Development"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1049\/iet-syb:20060038"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"2617","DOI":"10.1242\/dev.127.12.2617","article-title":"Impaired migration and delayed differentiation of pancreatic islet cells in mice lacking EGF-receptors","volume":"127","author":"miettinen","year":"2000","journal-title":"Development"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1242\/jcs.03079"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1038\/nature01712"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1126\/science.1191880"},{"key":"ref16","first-page":"1005","article-title":"The diverse signaling network of EGFR, HER2, HER3 and HER tyrosine kinase receptors and the consequences for therapeutic approaches","volume":"20","author":"zaczek","year":"2005","journal-title":"Histol Histopathol"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1076\/ejom.38.4.0269"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1016\/S0012-1606(02)00047-7"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1111\/dgd.12008"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1111\/j.1432-0436.2006.00088.x"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1177\/10454411970080010301"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1242\/dev.01690"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1091\/mbc.E14-02-0705"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1111\/j.1440-169X.2008.01053.x"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"855","DOI":"10.1242\/dev.112.3.855","article-title":"Substitution for mesenchyme by basement-membrane-like substratum and epidermal growth factor in inducing branching morphogenesis of mouse salivary epithelium","volume":"112","author":"nogawa","year":"1991","journal-title":"Development"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1098\/rspb.2001.1711"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1006\/dbio.1997.8593"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"651","DOI":"10.1038\/35036627","article-title":"The large-scale organization of metabolic networks","volume":"407","author":"jeong","year":"2000","journal-title":"Nature"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1159\/000067640"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1126\/science.1073374"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/28.1.123"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1093\/oxfordjournals.molbev.a003913"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1038\/35075138"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2132527100"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1038\/nrg1272"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/ieeexplore.ieee.org\/iel7\/8857\/7445291\/07150357.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/7445291\/07150357.pdf?arnumber=7150357","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,5,17]],"date-time":"2022-05-17T19:56:11Z","timestamp":1652817371000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/7150357\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,3,1]]},"references-count":72,"journal-issue":{"issue":"2"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2015.2452916","relation":{},"ISSN":["1545-5963"],"issn-type":[{"type":"print","value":"1545-5963"}],"subject":[],"published":{"date-parts":[[2016,3,1]]}}}