{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,7]],"date-time":"2025-11-07T19:07:21Z","timestamp":1762542441619,"version":"3.37.3"},"reference-count":65,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"2","license":[{"start":{"date-parts":[[2016,3,1]],"date-time":"2016-03-01T00:00:00Z","timestamp":1456790400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"name":"Research Grants Council of Hong Kong","award":["212111","212613"],"award-info":[{"award-number":["212111","212613"]}]},{"DOI":"10.13039\/501100001809","name":"Natural Science Foundation of China","doi-asserted-by":"publisher","award":["61101234","61402378"],"award-info":[{"award-number":["61101234","61402378"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Natural Science Foundation of CQ CSTC","award":["cstc2014jcyjA40031"],"award-info":[{"award-number":["cstc2014jcyjA40031"]}]},{"DOI":"10.13039\/501100012226","name":"Fundamental Research Funds for the Central Universities of China","doi-asserted-by":"crossref","award":["XDJK2014C044","2362015XK07"],"award-info":[{"award-number":["XDJK2014C044","2362015XK07"]}],"id":[{"id":"10.13039\/501100012226","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2016,3,1]]},"DOI":"10.1109\/tcbb.2015.2459713","type":"journal-article","created":{"date-parts":[[2015,7,22]],"date-time":"2015-07-22T18:36:11Z","timestamp":1437590171000},"page":"220-232","source":"Crossref","is-referenced-by-count":38,"title":["Predicting Protein Function via Semantic Integration of Multiple Networks"],"prefix":"10.1109","volume":"13","author":[{"given":"Guoxian","family":"Yu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Guangyuan","family":"Fu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jun","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hailong","family":"Zhu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0049634"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1186\/2047-217X-3-5"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2013.111"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"10s","DOI":"10.1186\/1471-2105-14-S3-S10","article-title":"Combining heterogeneous data sources for accurate functional annotation of proteins","volume":"14","author":"sokolov","year":"2013","journal-title":"BMC Bioinformat"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"8s","DOI":"10.1186\/1471-2105-14-S3-S8","article-title":"MS- $k$ NN: Protein function prediction by integrating multiple data sources","volume":"14","author":"lan","year":"2013","journal-title":"BMC Bioinformat"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1007\/s10994-011-5271-6"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2010.15"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btm195"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bth294"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1089\/10665270252935539"},{"key":"ref60","first-page":"321","article-title":"Learning with local and global consistency","author":"zhou","year":"0","journal-title":"Proc Adv Neural Inf Process Syst"},{"key":"ref62","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-7-187"},{"key":"ref61","doi-asserted-by":"publisher","DOI":"10.1016\/j.neunet.2013.01.021"},{"key":"ref63","doi-asserted-by":"publisher","DOI":"10.1109\/TKDE.2013.39"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2014.2351821"},{"key":"ref64","first-page":"9008","article-title":"Semantic similarity based on corpus statistics and lexical taxonomy","author":"jiang","year":"0","journal-title":"Proc 10th Int Conf Res Comput Linguistics"},{"key":"ref27","first-page":"1","article-title":"On the automated function prediction of big multi-species networks","author":"re","year":"0","journal-title":"Proc Netw Biol SIG Int Conf Intell Syst Molecular Biol"},{"key":"ref65","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-S5-S4"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2008-9-s1-s3"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh894"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/75556"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu263"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1002\/9783527619368.ch35"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btm332"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq262"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti1110"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1038\/msb4100129"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1186\/1752-0509-9-S1-S3"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-015-0474-7"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-327"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2012.114"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1101\/gr.5235706"},{"key":"ref57","first-page":"795","article-title":"Algorithms for learning kernels based on centered alignment","volume":"13","author":"cortes","year":"2012","journal-title":"J Mach Learning Res"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1007\/3-540-33486-6_8"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2014.2318707"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2010.38"},{"key":"ref53","first-page":"296","article-title":"An information-theoretic definition of similarity","author":"lin","year":"0","journal-title":"Proc 15th Int Conf Mach Learning"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1101\/gr.440803"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1003644"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-014-0430-y"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1016\/j.artmed.2014.03.003"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2008-9-s1-s2"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2340"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1155\/2014\/901419"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btg431"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1038\/82360"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2011.148"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-S3-S5"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2014.2323058"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2008-9-s1-s4"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/nrm2281"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1016\/j.tig.2013.09.005"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2032324100"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002386"},{"volume":"7","first-page":"91","year":"0","key":"ref7"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu144"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1003063"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1613\/jair.514","article-title":"Semantic similarity in a taxonomy: An Information-based measure and its application to problems of ambiguity in natural language","volume":"11","author":"resnik","year":"1999","journal-title":"J Artif Intell Res"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbr066"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt160"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts129"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"3s","DOI":"10.1186\/1471-2105-14-S3-S3","article-title":"Three-level prediction of protein function by combining profile-sequence search, profile-profile search, and domain co-occurrence networks","volume":"14","author":"wang","year":"2013","journal-title":"BMC Bioinformat"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2013.62"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000443"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-S3-S1"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/7445291\/07164278.pdf?arnumber=7164278","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,10,11]],"date-time":"2021-10-11T02:34:17Z","timestamp":1633919657000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/7164278\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,3,1]]},"references-count":65,"journal-issue":{"issue":"2"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2015.2459713","relation":{},"ISSN":["1545-5963"],"issn-type":[{"type":"print","value":"1545-5963"}],"subject":[],"published":{"date-parts":[[2016,3,1]]}}}