{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,18]],"date-time":"2026-02-18T22:34:16Z","timestamp":1771454056969,"version":"3.50.1"},"reference-count":45,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"5","license":[{"start":{"date-parts":[[2017,9,1]],"date-time":"2017-09-01T00:00:00Z","timestamp":1504224000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2017,9,1]],"date-time":"2017-09-01T00:00:00Z","timestamp":1504224000000},"content-version":"am","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2017,9,1]],"date-time":"2017-09-01T00:00:00Z","timestamp":1504224000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2017,9,1]],"date-time":"2017-09-01T00:00:00Z","timestamp":1504224000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/100000001","name":"US National Science Foundation","doi-asserted-by":"publisher","award":["CCF AF-1149811"],"award-info":[{"award-number":["CCF AF-1149811"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Sloan Research Fellowship"},{"DOI":"10.13039\/100000001","name":"NSF","doi-asserted-by":"publisher","award":["IIS 1502172"],"award-info":[{"award-number":["IIS 1502172"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"name":"UNC"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2017,9,1]]},"DOI":"10.1109\/tcbb.2015.2462332","type":"journal-article","created":{"date-parts":[[2015,7,29]],"date-time":"2015-07-29T14:34:45Z","timestamp":1438180485000},"page":"1013-1027","source":"Crossref","is-referenced-by-count":2,"title":["A Sparse Learning Framework for Joint Effect Analysis of Copy Number Variants"],"prefix":"10.1109","volume":"14","author":[{"given":"Zhiyong","family":"Wang","sequence":"first","affiliation":[{"name":"Toyota Technological Institute at Chicago, Chicago, IL"}]},{"given":"Benika","family":"Hall","sequence":"additional","affiliation":[{"name":"Department of Bioinformatics and Genomics, the University of North Carolina at Charlotte, Charlotte, NC"}]},{"given":"Jinbo","family":"Xu","sequence":"additional","affiliation":[{"name":"Toyota Technological Institute at Chicago, Chicago, IL"}]},{"given":"Xinghua","family":"Shi","sequence":"additional","affiliation":[{"name":"Department of Bioinformatics and Genomics, the University of North Carolina at Charlotte, Charlotte, NC"}]}],"member":"263","reference":[{"key":"ref39","first-page":"267","article-title":"T-cell acute lymphoblastic leukemia associated with complex karyotype and SET-NUP214 rearrangement: A case study and review of the literature","volume":"41","author":"lee","year":"2011","journal-title":"Ann Clin Lab Sci Summer"},{"key":"ref38","year":"0"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1038\/ejhg.2009.15"},{"key":"ref32","first-page":"2999","article-title":"Racial disparity in the frequency of PTEN mutations, but not microsatellite instability, in advanced endometrial cancers","volume":"6","author":"maxwell","year":"2000","journal-title":"Clinical Cancer Res"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1038\/ng1955"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1038\/nature08872"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1038\/nrg2593"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1038\/ng2110"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1086\/498850"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp596"},{"key":"ref10","first-page":"208","article-title":"A two-graph guided multi-task lasso approach for eQTL mapping","volume":"22","author":"chen","year":"0","journal-title":"Proc 15th Int Conf Artif Intell Statist J Mach Learn Res W&CP"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1093\/jnci\/djt173"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts227"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1109\/TST.2014.6961031"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu293"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1145\/2382936.2382996"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1101\/gr.1239303"},{"key":"ref16","first-page":"128","article-title":"CNVnet: Combining sparse learning and biological networks to capture joint effect of copy number variants","author":"wang","year":"0","journal-title":"Proc 5th ACM Conf Bioinform Comput Biol Health Inform"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btm601"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2012.05.011"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01279-11"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/ng.534"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1038\/nature09708"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.genom.9.081307.164217"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1038\/nature09534","article-title":"A map of human genome variation from population-scale sequencing","volume":"467","author":"consortium","year":"2010","journal-title":"Nature"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1111\/j.2517-6161.1996.tb02080.x","article-title":"Regression shrinkage and selection via the LASSO","volume":"58","author":"tibshirani","year":"1996","journal-title":"J Roy Statist Soc"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1145\/1015330.1015435"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1038\/nature08903"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp041"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1000587"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1136678"},{"key":"ref9","first-page":"1306","article-title":"Adaptive multi-task lasso: With application to eQTL detection","author":"lee","year":"0","journal-title":"Proc 24th Annu Conf Neural Inf Process Syst"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tig.2008.03.001"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1111\/j.1467-9868.2007.00627.x"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1126\/science.1260793"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1111\/j.1467-9868.2005.00490.x"},{"key":"ref21","article-title":"A note on the group lasso and a sparse group lasso","author":"friedman","year":"0"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1002\/0470011815.b2a14021"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1038\/nbt1295"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1002382"},{"key":"ref23","author":"liu","year":"2009","journal-title":"SLEP Sparse Learning with Efficient Projections"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1007\/s13174-010-0003-x"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-13-336"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"380","DOI":"10.1093\/sysbio\/45.3.380","article-title":"The probabilistic basis of Jaccard’s index of similarity","volume":"45","author":"raimundo","year":"1996","journal-title":"Systematic Biol"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1126\/science.286.5439.509","article-title":"Emergence of scaling in random networks","volume":"286","author":"barab\u00e1si","year":"1999","journal-title":"Science"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"https:\/\/ieeexplore.ieee.org\/ielam\/8857\/8060276\/7172455-aam.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/8060276\/07172455.pdf?arnumber=7172455","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,18]],"date-time":"2026-02-18T21:25:35Z","timestamp":1771449935000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/7172455\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,9,1]]},"references-count":45,"journal-issue":{"issue":"5"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2015.2462332","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,9,1]]}}}