{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,9]],"date-time":"2024-08-09T21:09:38Z","timestamp":1723237778394},"reference-count":29,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"1","license":[{"start":{"date-parts":[[2017,1,1]],"date-time":"2017-01-01T00:00:00Z","timestamp":1483228800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2017,1,1]]},"DOI":"10.1109\/tcbb.2015.2511750","type":"journal-article","created":{"date-parts":[[2015,12,23]],"date-time":"2015-12-23T19:05:12Z","timestamp":1450897512000},"page":"121-130","source":"Crossref","is-referenced-by-count":7,"title":["A Graph-Theoretical Approach for Motif Discovery in Protein Sequences"],"prefix":"10.1109","volume":"14","author":[{"given":"Elena","family":"Czeizler","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tommi","family":"Hirvola","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kalle","family":"Karhu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkl585"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.0030090"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btl243"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1007\/11960669_14"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1007\/BF00993379"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1186\/1748-7188-2-16"},{"key":"ref16","first-page":"269","article-title":"Combinatorial approaches to finding subtle signals in dna sequences","author":"pevzner","year":"0","journal-title":"Proc 8th Int Conf Intell Syst Molecular Biol"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1145\/369133.369172"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.89.22.10915"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1109\/ICDE.1996.492202"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0000967"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1002\/pro.5560040820"},{"key":"ref27","year":"0"},{"key":"ref3","first-page":"28","article-title":"Fitting a mixture model by expectation maximization to discover motifs in biopolymers","volume":"2","author":"bailey","year":"0","journal-title":"Proc Int Conf Intell Syst Mol Biol"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh012"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1093\/dnares\/dsp014","article-title":"Exhaustive search for over-represented DNA sequence motifs with CisFinder","volume":"16","author":"a","year":"2009","journal-title":"DNA Res"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkj143"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkg545"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkj063"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/nbt1098-939"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000071"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh465"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"255","DOI":"10.4137\/EBO.S885","article-title":"Inconsistent distances in substitution matrices can be avoided by properly handling hydrophobic residues","volume":"4","author":"baussand","year":"2008","journal-title":"Evol Bioinformatics"},{"key":"ref22","doi-asserted-by":"crossref","DOI":"10.1186\/1745-6150-1-11","article-title":"A survey of motif discovery methods in an integrated framework","volume":"1","author":"sandve","year":"2006","journal-title":"Biol Direct"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.0020036"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-8-S7-S21"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.1998.5.279"},{"key":"ref26","first-page":"202","article-title":"Enumerating and ranking discrete motifs","volume":"5","author":"nevill-manning","year":"0","journal-title":"Proc Int Conf Intell Syst Mol Biol"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1021\/ac60052a025"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/7842713\/07364223.pdf?arnumber=7364223","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,10,11]],"date-time":"2021-10-11T02:34:36Z","timestamp":1633919676000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/7364223\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,1,1]]},"references-count":29,"journal-issue":{"issue":"1"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2015.2511750","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,1,1]]}}}