{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,7]],"date-time":"2026-03-07T19:07:37Z","timestamp":1772910457729,"version":"3.50.1"},"reference-count":41,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"5","license":[{"start":{"date-parts":[[2020,9,1]],"date-time":"2020-09-01T00:00:00Z","timestamp":1598918400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2020,9,1]],"date-time":"2020-09-01T00:00:00Z","timestamp":1598918400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2020,9,1]],"date-time":"2020-09-01T00:00:00Z","timestamp":1598918400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["61472333, 61772441, 61472335, 61272152, and 414761"],"award-info":[{"award-number":["61472333, 61772441, 61472335, 61272152, and 414761"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2020,9,1]]},"DOI":"10.1109\/tcbb.2019.2907536","type":"journal-article","created":{"date-parts":[[2019,3,26]],"date-time":"2019-03-26T21:16:25Z","timestamp":1553634985000},"page":"1639-1647","source":"Crossref","is-referenced-by-count":34,"title":["Deep Collaborative Filtering for Prediction of Disease Genes"],"prefix":"10.1109","volume":"17","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1081-7658","authenticated-orcid":false,"given":"Xiangxiang","family":"Zeng","sequence":"first","affiliation":[{"name":"Department of Computer Science, Xiamen University, Xiamen, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yinglai","family":"Lin","sequence":"additional","affiliation":[{"name":"Department of Computer Science, Xiamen University, Xiamen, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yuying","family":"He","sequence":"additional","affiliation":[{"name":"Department of Computer Science, Xiamen University, Xiamen, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Linyuan","family":"L\u00fc","sequence":"additional","affiliation":[{"name":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, Sichuan, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0817-0878","authenticated-orcid":false,"given":"Xiaoping","family":"Min","sequence":"additional","affiliation":[{"name":"Department of Computer Science, Xiamen University, Xiamen, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7289-2114","authenticated-orcid":false,"given":"Alfonso","family":"Rodr\u00edguez-Pat\u00f3n","sequence":"additional","affiliation":[{"name":"Departamento de Inteligencia Artificial, Universidad Politécnica de Madrid, Madrid, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2008.05TT"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-389"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2010.11.052"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1126\/science.1150021"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2007-8-12-r258"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh113"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1016\/j.cels.2018.03.001"},{"key":"ref36","article-title":"The STRING database in 2017: Quality-controlled protein–protein association networks, made broadly accessible","volume":"45","author":"szklarczyk","year":"2016","journal-title":"Nucleic Acids Res"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1002\/dvdy.10503"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkg027"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu269"},{"key":"ref40","author":"xie","year":"2015","journal-title":"Prioritizing Disease Genes by Birandom Walk"},{"key":"ref11","first-page":"2643","article-title":"Deep content-based music recommendation","author":"dieleman","year":"2013","journal-title":"Proc Int Conf Neural Inf Process"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1145\/2647868.2654940"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1145\/2783258.2783273"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1145\/2806416.2806527"},{"key":"ref15","first-page":"2445","article-title":"PU learning for matrix completion","author":"hsieh","year":"2015","journal-title":"Proc Int Conf Int Conf Mach Learn"},{"key":"ref16","first-page":"37","article-title":"PU matrix completion with graph information","author":"natarajan","year":"2016","journal-title":"Proc IEEE Int Workshop Comput Advances Multi-Sensor Adaptive Process"},{"key":"ref17","first-page":"153","article-title":"Greedy layer-wise training of deep networks","author":"schlkopf","year":"2006","journal-title":"Proc Int Conf Neural Inf Process"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1145\/1390156.1390294"},{"key":"ref19","first-page":"3371","article-title":"Stacked denoising autoencoders: Learning useful representations in a deep network with a local denoising criterion","volume":"11","author":"vincent","year":"2010","journal-title":"J Mach Learn Res"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkl940"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000641"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn788"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/msb.2008.27"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1371\/annotation\/5aeb88a0-1630-4a07-bb49-32cb5d617af1"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/30.1.69"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq108"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1038\/sj.ejhg.5201585"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1111\/j.1742-4658.2012.08471.x"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/ng1090"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1016\/j.ajhg.2008.02.013"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/ng0504-431"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/MC.2009.263"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1137\/1.9781611974973.41"},{"key":"ref21","article-title":"Provable inductive matrix completion","author":"jain","year":"2013"},{"key":"ref24","first-page":"1009d","article-title":"The arabidopsis information resource (TAIR): Gene structure and function annotation","volume":"36","author":"david","year":"2008","journal-title":"Nucleic Acids Res"},{"key":"ref41","first-page":"1247","article-title":"Deep canonical correlation analysis","author":"andrew","year":"2013","journal-title":"Proc Int Conf Mach Learn"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1101\/gr.118992.110"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2011.03.037"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gki066"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/9216708\/08674571.pdf?arnumber=8674571","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,31]],"date-time":"2024-07-31T20:25:12Z","timestamp":1722457512000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/8674571\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,9,1]]},"references-count":41,"journal-issue":{"issue":"5"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2019.2907536","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,9,1]]}}}