{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,27]],"date-time":"2026-02-27T02:34:27Z","timestamp":1772159667871,"version":"3.50.1"},"reference-count":104,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"5","license":[{"start":{"date-parts":[[2021,9,1]],"date-time":"2021-09-01T00:00:00Z","timestamp":1630454400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["P30 CA006927"],"award-info":[{"award-number":["P30 CA006927"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2021,9,1]]},"DOI":"10.1109\/tcbb.2020.2965934","type":"journal-article","created":{"date-parts":[[2020,1,10]],"date-time":"2020-01-10T15:56:22Z","timestamp":1578671782000},"page":"2032-2044","source":"Crossref","is-referenced-by-count":4,"title":["Supervised Dimension Reduction for Large-Scale \u201cOmics\u201d Data With Censored Survival Outcomes Under Possible Non-Proportional Hazards"],"prefix":"10.1109","volume":"18","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1355-1173","authenticated-orcid":false,"given":"Lauren","family":"Spirko-Burns","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8475-383X","authenticated-orcid":false,"given":"Karthik","family":"Devarajan","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-0258(19960229)15:4<361::AID-SIM168>3.0.CO;2-4"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1002\/sim.4780030207"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1002\/sta4.67"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"1189","DOI":"10.1214\/aos\/1013203451","article-title":"Greedy function approximation: A gradient boosting machine","volume":"29","author":"friedman","year":"2001","journal-title":"The Ann Statist"},{"key":"ref31","first-page":"1","article-title":"Multivariate adaptive regression splines (with discussion)","volume":"19","author":"friedman","year":"1991","journal-title":"The Ann Statist"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1080\/00401706.1993.10485033"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1001\/jama.1982.03320430047030"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1001\/jama.288.2.169"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1111\/j.0006-341X.2000.00337.x"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti422"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.2202\/1544-6115.1423"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu065"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1214\/10-IMSCOLL606"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1111\/j.2517-6161.1972.tb00899.x"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1016\/0047-2727(84)90067-7"},{"key":"ref21","first-page":"259","article-title":"Predicting patient survival from microarray data by accelerated failure time modeling using partial least squares and LASSO","volume":"63","author":"datta","year":"2007","journal-title":"Bioinformatics"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1016\/j.csda.2010.06.010"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1002\/1099-128X(200102)15:2<85::AID-CEM601>3.0.CO;2-9"},{"key":"ref101","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiolchem.2005.02.001"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq035"},{"key":"ref100","doi-asserted-by":"publisher","DOI":"10.1534\/g3.116.038059"},{"key":"ref25","first-page":"26","article-title":"A supervised approach for predicting patient survival with feature expression data","volume":"5521718","author":"devarajan","year":"2010","journal-title":"Proc IEEE 7th Int Symp Bioinf Bioeng"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1093\/bioinformatics\/bth900","article-title":"Partial Cox regression analysis for high-dimensional microarray feature expression data","volume":"20","author":"li","year":"2004","journal-title":"Bioinformatics"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bth415"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1111\/j.1541-0420.2005.00405.x"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1093\/biostatistics\/kxm015"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1093\/biostatistics\/kxn005"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1002\/cem.1180010105"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-606"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2012.12.034"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti324"},{"key":"ref52","first-page":"65","article-title":"Kernel Cox regression models for linking feature expression profiles to censored survival data","volume":"8","author":"li","year":"2003","journal-title":"Pac Symp Biocomput"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1111\/j.1541-0420.2006.00562.x"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1198\/016214505000000628"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1080\/00401706.1971.10488811"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1291\/hypres.31.401"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu660"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.191502998"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-323"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1038\/nm733"},{"key":"ref9","first-page":"32","article-title":"Partial least squares: A versatile tool for the analysis of high dimensional genomic data","volume":"8","author":"boulesteix","year":"2007","journal-title":"Bioinformatics"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1007\/b97377"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.4137\/CIN.S9048"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms9234"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2015.0192"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/90.2.341"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1093\/biostatistics\/4.2.249"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1002\/9781118032985"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/93.1.147"},{"key":"ref73","first-page":"941","article-title":"Boosting as a regularized path to a maximum margin classifier","volume":"5","author":"rosset","year":"2004","journal-title":"J Mach Learn Res"},{"key":"ref72","doi-asserted-by":"publisher","DOI":"10.1002\/gepi.22194"},{"key":"ref71","doi-asserted-by":"publisher","DOI":"10.1214\/ss\/1177010394"},{"key":"ref70","doi-asserted-by":"publisher","DOI":"10.1002\/cncr.30457"},{"key":"ref76","doi-asserted-by":"publisher","DOI":"10.1093\/biostatistics\/kxj006"},{"key":"ref77","doi-asserted-by":"publisher","DOI":"10.18637\/jss.v039.i05"},{"key":"ref74","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2288-11-28"},{"key":"ref75","doi-asserted-by":"publisher","DOI":"10.1158\/1940-6207.CAPR-10-0155"},{"key":"ref78","article-title":"Variable selection and supervised dimension reduction for large-scale genomic data with censored survival outcomes","author":"spirko","year":"2017"},{"key":"ref79","doi-asserted-by":"publisher","DOI":"10.1086\/503627"},{"key":"ref60","article-title":"Dynamic regression models for survival data","author":"martinussen","year":"2006","journal-title":"Statistics for Biology and Health"},{"key":"ref62","doi-asserted-by":"publisher","DOI":"10.1016\/j.mbs.2004.10.007"},{"key":"ref61","doi-asserted-by":"publisher","DOI":"10.1016\/j.chemolab.2012.07.010"},{"key":"ref63","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/18.12.1625"},{"key":"ref64","first-page":"189","article-title":"Checking goodness-of-fit of the accelerated failure time model for survival data","volume":"i","author":"novak","year":"2010","journal-title":"Proc Contributed Papers"},{"key":"ref65","doi-asserted-by":"publisher","DOI":"10.1007\/s10985-007-9076-7"},{"key":"ref66","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2012.63"},{"key":"ref67","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/18.suppl_1.S120"},{"key":"ref68","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0076746"},{"key":"ref2","author":"ahmed","year":"2014","journal-title":"Perspectives on Big Data Analysis Methodologies and Applications"},{"key":"ref69","article-title":"R: A language and environment for statistical computing","year":"2018","journal-title":"R Foundation for Statistical Computing"},{"key":"ref1","doi-asserted-by":"crossref","DOI":"10.1007\/978-3-319-03149-1","author":"ahmed","year":"2014","journal-title":"Penalty Pretest and Shrinkage Estimation Variable Selection and Estimation"},{"key":"ref95","doi-asserted-by":"publisher","DOI":"10.1093\/biostatistics\/kxl007"},{"key":"ref94","doi-asserted-by":"publisher","DOI":"10.2202\/1544-6115.1550"},{"key":"ref93","doi-asserted-by":"publisher","DOI":"10.1111\/j.1541-0420.2007.00877.x"},{"key":"ref92","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/asp016"},{"key":"ref91","doi-asserted-by":"publisher","DOI":"10.1198\/016214507000000509"},{"key":"ref104","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002975"},{"key":"ref90","doi-asserted-by":"publisher","DOI":"10.1016\/j.csda.2008.05.021"},{"key":"ref103","doi-asserted-by":"publisher","DOI":"10.1002\/1097-0142(1950)3:1<32::AID-CNCR2820030106>3.0.CO;2-3"},{"key":"ref102","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/92.1.1"},{"key":"ref98","doi-asserted-by":"publisher","DOI":"10.1002\/sim.7518"},{"key":"ref99","doi-asserted-by":"crossref","first-page":"175","DOI":"10.4310\/SII.2013.v6.n2.a2","article-title":"Doubly regularized Cox regression for high-dimensional survival data with group structures","volume":"6","author":"wu","year":"2013","journal-title":"Statist Interface"},{"key":"ref96","doi-asserted-by":"publisher","DOI":"10.1214\/08-AOAS182"},{"key":"ref97","doi-asserted-by":"publisher","DOI":"10.1002\/0470845015.cpa012"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btm305"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/66.3.429"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1111\/j.1541-0420.2008.01074.x"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1057\/palgrave.jors.2602637"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/asq024"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/89.3.659"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1002\/sim.4242"},{"key":"ref82","doi-asserted-by":"publisher","DOI":"10.1006\/jmva.1993.1028"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1002\/sim.5460"},{"key":"ref81","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1530509100"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1002\/sim.4780050111"},{"key":"ref84","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx300"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1002\/sim.3292"},{"key":"ref83","doi-asserted-by":"publisher","DOI":"10.1002\/0471667196.ess4031.pub2"},{"key":"ref80","doi-asserted-by":"publisher","DOI":"10.1111\/j.2517-6161.1990.tb01786.x"},{"key":"ref89","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq617"},{"key":"ref85","doi-asserted-by":"publisher","DOI":"10.2307\/2337123"},{"key":"ref86","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-0258(19970228)16:4<385::AID-SIM380>3.0.CO;2-3"},{"key":"ref87","doi-asserted-by":"publisher","DOI":"10.1158\/1078-0432.CCR-08-0196"},{"key":"ref88","doi-asserted-by":"publisher","DOI":"10.1126\/science.1260419"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/9563006\/08955866.pdf?arnumber=8955866","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,24]],"date-time":"2023-09-24T19:50:39Z","timestamp":1695585039000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/8955866\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,9,1]]},"references-count":104,"journal-issue":{"issue":"5"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2020.2965934","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/586529","asserted-by":"object"}]},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,9,1]]}}}