{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,26]],"date-time":"2026-03-26T11:25:29Z","timestamp":1774524329067,"version":"3.50.1"},"reference-count":45,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"6","license":[{"start":{"date-parts":[[2021,11,1]],"date-time":"2021-11-01T00:00:00Z","timestamp":1635724800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2021,11,1]],"date-time":"2021-11-01T00:00:00Z","timestamp":1635724800000},"content-version":"am","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2021,11,1]]},"DOI":"10.1109\/tcbb.2020.2988985","type":"journal-article","created":{"date-parts":[[2020,4,21]],"date-time":"2020-04-21T20:07:54Z","timestamp":1587499674000},"page":"2198-2207","source":"Crossref","is-referenced-by-count":9,"title":["A Convolutional Deep Clustering Framework for Gene Expression Time Series"],"prefix":"10.1109","volume":"18","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4530-6674","authenticated-orcid":false,"given":"Ozan Frat","family":"Ozgul","sequence":"first","affiliation":[]},{"given":"Batuhan","family":"Bardak","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1741-0570","authenticated-orcid":false,"given":"Mehmet","family":"Tan","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"ref39","article-title":"Adam: A method for stochastic optimization","author":"kingma","year":"2014"},{"key":"ref38","first-page":"315","article-title":"Deep sparse rectifier neural networks","author":"glorot","year":"2011","journal-title":"Proc 14th Int Conf Artif Intell Statist"},{"key":"ref33","author":"goodfellow","year":"2016","journal-title":"Deep Learning"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1109\/ACCESS.2018.2855437"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1016\/S0375-9601(98)00457-5"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1007\/s11571-007-9023-z"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-70096-0_39"},{"key":"ref36","article-title":"Learning representations by back-propagating errors","volume":"5","author":"rumelhart","year":"1988","journal-title":"Cogn Model"},{"key":"ref35","first-page":"478","article-title":"Unsupervised deep embedding for clustering analysis","author":"xie","year":"2016","journal-title":"Proc Int Conf Mach Learn"},{"key":"ref34","first-page":"52","article-title":"Stacked convolutional auto-encoders for hierarchical feature extraction","author":"masci","year":"2011","journal-title":"Proc Int Conf Artif Neural Netw"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.95.25.14863"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1016\/j.fss.2004.10.014"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1007\/0-387-25465-X_15"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/17.10.977"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/18.9.1194"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1109\/ICMLA.2017.0-181"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-018-1536-8"},{"key":"ref16","article-title":"Clustering of time-series data [online first]","author":"\u00f6zko\u00e7","year":"2020","journal-title":"Data Mining Methods and Applications"},{"key":"ref17","first-page":"1","article-title":"Predicting drug activity by image encoded gene expression profiles","author":"\u00f6zg\u00fcl","year":"2018","journal-title":"Proc 26th Signal Process Commun Appl Conf"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1145\/319463.319472"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR.2000.854929"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.182558799"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.5194\/npg-9-325-2002"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevE.66.026702"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1091\/mbc.11.12.4241"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti1022"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/nature744"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1142\/S0129183105007492"},{"key":"ref8","first-page":"393","article-title":"DHC: A density-based hierarchical clustering method for time series gene expression data","author":"jiang","year":"2003","journal-title":"Proc IEEE Symp Bioinf BioEng"},{"key":"ref7","article-title":"B cells and antibodies","author":"alberts","year":"2002","journal-title":"Molecular Biology of the Cell"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.bioeng.9.060906.151904"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1089\/106652799318274"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1038\/10343"},{"key":"ref20","article-title":"Structures of the recurrence plot of heart rate variability signal as a tool for predicting the onset of paroxysmal atrial fibrillation","volume":"1","author":"mohebbi","year":"2011","journal-title":"Journal of medical signals and sensors"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.66.5.2346-2348.1998"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1007\/978-0-387-73003-5_196"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1016\/j.patrec.2009.09.011"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1214\/009053607000000677"},{"key":"ref42","author":"kaufman","year":"2009","journal-title":"Finding Groups in Data An Introduction to Cluster Analysis"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1007\/BF02289263"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1005896"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/ICDM.2013.128"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1053\/gast.1997.v113.pm9322504"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1142\/S0218127411029021"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz369"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/9642421\/09075435.pdf?arnumber=9075435","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,31]],"date-time":"2022-01-31T22:11:53Z","timestamp":1643667113000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/9075435\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,11,1]]},"references-count":45,"journal-issue":{"issue":"6"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2020.2988985","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,11,1]]}}}