{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T12:23:33Z","timestamp":1740140613743,"version":"3.37.3"},"reference-count":81,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"4","license":[{"start":{"date-parts":[[2021,7,1]],"date-time":"2021-07-01T00:00:00Z","timestamp":1625097600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"DOI":"10.13039\/501100008413","name":"Instrumentariumin Tiedes\u00e4\u00e4ti\u00f6","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100008413","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002341","name":"Academy of Finland","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002341","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2021,7,1]]},"DOI":"10.1109\/tcbb.2021.3076259","type":"journal-article","created":{"date-parts":[[2021,4,29]],"date-time":"2021-04-29T19:32:51Z","timestamp":1619724771000},"page":"1281-1289","source":"Crossref","is-referenced-by-count":3,"title":["Detection of Binding Sites on SARS-CoV-2 Spike Protein Receptor-Binding Domain by Molecular Dynamics Simulations in Mixed Solvents"],"prefix":"10.1109","volume":"18","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2352-6550","authenticated-orcid":false,"given":"Elmeri M.","family":"Jokinen","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0063-1905","authenticated-orcid":false,"given":"Krishnasamy","family":"Gopinath","sequence":"additional","affiliation":[]},{"given":"Sami T.","family":"Kurkinen","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7188-4016","authenticated-orcid":false,"given":"Olli T.","family":"Pentikainen","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"ref73","doi-asserted-by":"publisher","DOI":"10.1155\/2010\/758397"},{"key":"ref72","doi-asserted-by":"publisher","DOI":"10.1016\/0002-9343(82)90055-9"},{"key":"ref71","doi-asserted-by":"publisher","DOI":"10.3389\/fchem.2020.572885"},{"key":"ref70","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2349-y"},{"key":"ref76","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00041-07"},{"key":"ref77","article-title":"Evaluation of the virucidal effects of rosmarinic acid against enterovirus 71 infection via in vitro and in vivo study","volume":"16","author":"lin","year":"2019","journal-title":"Journal of Virology"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/28.1.235"},{"key":"ref74","doi-asserted-by":"publisher","DOI":"10.1002\/mds.21321"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1021\/jm070063t"},{"key":"ref75","doi-asserted-by":"publisher","DOI":"10.1111\/dom.13654"},{"key":"ref78","doi-asserted-by":"publisher","DOI":"10.1016\/j.antiviral.2017.03.014"},{"key":"ref79","doi-asserted-by":"publisher","DOI":"10.3389\/fchem.2020.589769"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jpcb.6b03515"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1002\/bip.22742"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2018.00923"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2018.02.038"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1021\/ja206086c"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1038\/nature06526"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1080\/07391102.2020.1773318"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-020-0688-y"},{"key":"ref60","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.20035"},{"key":"ref62","doi-asserted-by":"publisher","DOI":"10.1002\/prot.20033"},{"key":"ref61","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmgm.2005.12.005"},{"key":"ref63","doi-asserted-by":"publisher","DOI":"10.1021\/ct300418h"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1111\/cbdd.13446"},{"key":"ref64","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.00442-08"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.21814"},{"key":"ref65","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M111.325803"},{"key":"ref66","doi-asserted-by":"publisher","DOI":"10.1126\/science.abc2241"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1007\/s10822-007-9159-2"},{"key":"ref67","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2380-z"},{"key":"ref68","doi-asserted-by":"publisher","DOI":"10.1126\/science.abb7269"},{"key":"ref69","doi-asserted-by":"publisher","DOI":"10.1126\/science.abd3255"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.7150\/ijbs.45053"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijsu.2020.04.018"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1111\/cbdd.13584"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmgm.2015.12.006"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1007\/s10822-015-9870-3"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-23768-7"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4939-7201-2_18"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.9b00383"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.3389\/fphar.2018.00260"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1063\/1.470117"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1021\/ct400341p"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1007\/s10822-004-3752-4"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1021\/ci800315d"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1021\/jm030644s"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1021\/jm051256o"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1021\/jm0306430"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1021\/ci800298z"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.8b00265"},{"article-title":"The {PyMOL} molecular graphics system, version?2.3","year":"2015","author":"schr\u00f6dinger","key":"ref52"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1038\/nrd.2018.168"},{"key":"ref40","first-page":"3823","article-title":"AMBER2020, university of California, San Fransisco","volume":"142","author":"case","year":"2020","journal-title":"J Amer Chem Soc"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"1813","DOI":"10.1056\/NEJMoa2007764","article-title":"Remdesivir for the treatment of Covid-19 &#x2013; Final report","volume":"383","author":"beigel","year":"2020","journal-title":"New Engl J Med"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1056\/NEJMoa2021436","article-title":"Effect of dexamethasone in hospitalized patients with COVID-19 &#x2013; Preliminary report","volume":"384","author":"horby","year":"2021","journal-title":"New Engl J Med"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1177\/1756287212453866"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpg.2011.10.015"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1016\/j.lfs.2020.118205"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1080\/07391102.2020.1824816"},{"key":"ref81","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.RA118.002352"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1080\/07391102.2020.1835721"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmgm.2020.107716"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2020.01664"},{"key":"ref80","doi-asserted-by":"publisher","DOI":"10.4269\/ajtmh.1999.61.180"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2180-5"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1126\/science.abb2507"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2179-y"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2020.03.045"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2020.02.058"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1063\/1.464397"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2223-y"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1097\/01.ede.0000181633.80269.4c"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1021\/ct400314y"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1021\/ct200909j"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1016\/0021-9991(77)90098-5"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1063\/1.439486"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jctc.5b00255"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1063\/1.445869"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1021\/ci400741u"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.20820"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/9508625\/09419084.pdf?arnumber=9419084","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,12]],"date-time":"2022-01-12T16:06:25Z","timestamp":1642003585000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/9419084\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,7,1]]},"references-count":81,"journal-issue":{"issue":"4"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2021.3076259","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"type":"print","value":"1545-5963"},{"type":"electronic","value":"1557-9964"},{"type":"electronic","value":"2374-0043"}],"subject":[],"published":{"date-parts":[[2021,7,1]]}}}