{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,25]],"date-time":"2026-07-25T05:51:23Z","timestamp":1784958683385,"version":"3.55.0"},"reference-count":57,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"6","license":[{"start":{"date-parts":[[2022,11,1]],"date-time":"2022-11-01T00:00:00Z","timestamp":1667260800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2022,11,1]],"date-time":"2022-11-01T00:00:00Z","timestamp":1667260800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2022,11,1]],"date-time":"2022-11-01T00:00:00Z","timestamp":1667260800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/100014440","name":"Ministerio de Ciencia Innovacin y Universidades","doi-asserted-by":"publisher","award":["FPU17\/02742"],"award-info":[{"award-number":["FPU17\/02742"]}],"id":[{"id":"10.13039\/100014440","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004837","name":"Ministerio de Ciencia e Innovacin","doi-asserted-by":"publisher","award":["PID2019-105221RB-C41"],"award-info":[{"award-number":["PID2019-105221RB-C41"]}],"id":[{"id":"10.13039\/501100004837","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004837","name":"Ministerio de Ciencia e Innovacin","doi-asserted-by":"publisher","award":["PID2020-114635RBI00"],"award-info":[{"award-number":["PID2020-114635RBI00"]}],"id":[{"id":"10.13039\/501100004837","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003329","name":"Ministerio de Economa y Competitividad","doi-asserted-by":"publisher","award":["TIN2016-77158-C4-3-R"],"award-info":[{"award-number":["TIN2016-77158-C4-3-R"]}],"id":[{"id":"10.13039\/501100003329","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003329","name":"Ministerio de Economa y Competitividad","doi-asserted-by":"publisher","award":["TIN2016-78011- C4-1-R"],"award-info":[{"award-number":["TIN2016-78011- C4-1-R"]}],"id":[{"id":"10.13039\/501100003329","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100010801","name":"Xunta de Galicia","doi-asserted-by":"publisher","award":["ED431C 2017\/58"],"award-info":[{"award-number":["ED431C 2017\/58"]}],"id":[{"id":"10.13039\/501100010801","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100010801","name":"Xunta de Galicia","doi-asserted-by":"publisher","award":["ED431G 2019\/01"],"award-info":[{"award-number":["ED431G 2019\/01"]}],"id":[{"id":"10.13039\/501100010801","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100010665","name":"H2020 Marie Skodowska-Curie Actions","doi-asserted-by":"publisher","award":["690941"],"award-info":[{"award-number":["690941"]}],"id":[{"id":"10.13039\/100010665","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2022,11,1]]},"DOI":"10.1109\/tcbb.2021.3108843","type":"journal-article","created":{"date-parts":[[2021,9,1]],"date-time":"2021-09-01T20:08:50Z","timestamp":1630526930000},"page":"3564-3577","source":"Crossref","is-referenced-by-count":69,"title":["Memory-Efficient Assembly Using Flye"],"prefix":"10.1109","volume":"19","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-0317-5482","authenticated-orcid":false,"given":"Borja","family":"Freire","sequence":"first","affiliation":[{"name":"Centro de investigación CITIC, Universidade da Coruña, A Coruña, Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4616-0774","authenticated-orcid":false,"given":"Susana","family":"Ladra","sequence":"additional","affiliation":[{"name":"Centro de investigación CITIC, Universidade da Coruña, A Coruña, Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8727-0980","authenticated-orcid":false,"given":"Jos\u00e9 R.","family":"Param\u00e1","sequence":"additional","affiliation":[{"name":"Centro de investigación CITIC, Universidade da Coruña, A Coruña, Spain"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-05269-4_4"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-33122-0_18"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp336"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp324"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2009-10-3-r25"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1145\/1082036.1082039"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq697"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1109\/BIBE.2010.22"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1016\/S0196-6774(03)00087-7"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-38036-5_24"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti1114"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2016.0141"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1101\/gr.2395204"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2011-12-8-125"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-016-0917-0"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-29334-5"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.1995.2.291"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1126\/science.aau9343"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1093\/bfgp\/elr035"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1007\/BF01188580"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-S1-S14"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.171285098"},{"key":"ref50","first-page":"233","article-title":"Succinct indexable dictionaries with applications to encoding k-ary trees and multisets","author":"raman","year":"2002","journal-title":"Proc 13th Annu ACM-SIAM Symp Discrete Algorithms"},{"key":"ref51","article-title":"Compact pat trees","author":"clark","year":"1997"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty191"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1016\/j.jalgor.2003.12.002"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1145\/362686.362692"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-333"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt020"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx304"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1109\/IWOBI.2018.8464194"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0075505"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-313"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw279"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1002\/spe.2524"},{"key":"ref14","doi-asserted-by":"crossref","DOI":"10.1007\/978-3-642-29575-1","author":"plattner","year":"2012","journal-title":"In-Memory Data Management Technology and Applications"},{"key":"ref15","first-page":"89","article-title":"Succinct static data structures","author":"jacobson","year":"1989"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9781316588284"},{"key":"ref17","first-page":"27","article-title":"Practical implementation of rank and select queries","author":"gonz\u00e1lez","year":"2005","journal-title":"Poster Proc Volume 4th Workshop Efficient Exp Algorithms"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1604560113"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-019-0072-8"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"19d","DOI":"10.1093\/nar\/gkq1019","article-title":"The sequence read archive","volume":"39","author":"leinonen","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.7208\/chicago\/9780226080345.001.0001"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-354"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.1002195"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1145\/2807591.2807664"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1109\/SC.2014.41"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1109\/SFCS.1989.63533"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-15-S9-S2"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1016\/j.tcs.2012.02.006"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr505"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-28332-1_21"},{"key":"ref47","first-page":"91","article-title":"Optimized relative lempel-ziv compression of genomes","author":"kuruppu","year":"2011","journal-title":"Proc 34th Australas Comput Sci Conf"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1145\/1871437.1871594"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1145\/1645953.1646008"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1109\/DCC.2019.00028"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-16321-0_20"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/9976468\/09527151.pdf?arnumber=9527151","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,31]],"date-time":"2024-07-31T20:28:08Z","timestamp":1722457688000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/9527151\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,11,1]]},"references-count":57,"journal-issue":{"issue":"6"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2021.3108843","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,11,1]]}}}