{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,14]],"date-time":"2026-04-14T23:29:55Z","timestamp":1776209395711,"version":"3.50.1"},"reference-count":75,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"6","license":[{"start":{"date-parts":[[2022,11,1]],"date-time":"2022-11-01T00:00:00Z","timestamp":1667260800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2022,11,1]],"date-time":"2022-11-01T00:00:00Z","timestamp":1667260800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2022,11,1]],"date-time":"2022-11-01T00:00:00Z","timestamp":1667260800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2022,11,1]]},"DOI":"10.1109\/tcbb.2021.3114349","type":"journal-article","created":{"date-parts":[[2021,9,21]],"date-time":"2021-09-21T20:00:43Z","timestamp":1632254443000},"page":"3624-3634","source":"Crossref","is-referenced-by-count":13,"title":["predML-Site: Predicting Multiple Lysine PTM Sites With Optimal Feature Representation and Data Imbalance Minimization"],"prefix":"10.1109","volume":"19","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4830-0657","authenticated-orcid":false,"given":"Sabit","family":"Ahmed","sequence":"first","affiliation":[{"name":"Department of Computer Science and Engineering, Rajshahi University of Engineering and Technology, Kazla, Rajshahi, Bangladesh"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6724-0338","authenticated-orcid":false,"given":"Afrida","family":"Rahman","sequence":"additional","affiliation":[{"name":"Department of Computer Science and Engineering, Rajshahi University of Engineering and Technology, Kazla, Rajshahi, Bangladesh"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2966-7055","authenticated-orcid":false,"given":"Md. Al Mehedi","family":"Hasan","sequence":"additional","affiliation":[{"name":"Department of Computer Science and Engineering, Rajshahi University of Engineering and Technology, Kazla, Rajshahi, Bangladesh"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5005-9922","authenticated-orcid":false,"given":"Julia","family":"Rahman","sequence":"additional","affiliation":[{"name":"Institute for Integrated and Intelligent Systems, Griffith University, Brisbane, QLD, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4841-9604","authenticated-orcid":false,"given":"Md Khaled Ben","family":"Islam","sequence":"additional","affiliation":[{"name":"Department of Computer Science and Engineering, Pabna University of Science and Technology, Pabna, Bangladesh"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1546-3959","authenticated-orcid":false,"given":"Shamim","family":"Ahmad","sequence":"additional","affiliation":[{"name":"Department of Computer Science and Engineering, University of Rajshahi, Rajshahi, Bangladesh"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref73","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx387"},{"key":"ref72","doi-asserted-by":"publisher","DOI":"10.1039\/c3mb25555g"},{"key":"ref71","doi-asserted-by":"publisher","DOI":"10.1039\/C6MB00860G"},{"key":"ref70","article-title":"A practical guide to support vector classification","author":"hsu","year":"2003"},{"key":"ref74","doi-asserted-by":"publisher","DOI":"10.2174\/1389202921666200511072327"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1049"},{"key":"ref75","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-101"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1155\/2014\/947416"},{"key":"ref33","article-title":"Controlling the sensitivity of support vector machines","author":"veropoulos","year":"1999","journal-title":"Proc Int Joint Conf AI"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1016\/j.chemolab.2019.06.009"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1155\/JBB.2005.132"},{"key":"ref30","article-title":"Prediction of 2-hydroxyisobutyrylation sites by integrating multiple sequence features with ensemble support vector machine","volume":"87","author":"zhe","year":"2020","journal-title":"Comput Biol Chem"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1109\/ACCESS.2019.2900275"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1016\/j.ab.2017.03.008"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmgm.2017.07.022"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1039\/C7MB00180K"},{"key":"ref60","doi-asserted-by":"publisher","DOI":"10.2174\/1389202919666191014091250"},{"key":"ref62","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2019.03.011"},{"key":"ref61","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2019.2957758"},{"key":"ref63","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2015.04.016"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0024756"},{"key":"ref64","doi-asserted-by":"publisher","DOI":"10.2174\/1573406413666170515120507"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1006\/abio.1996.0001"},{"key":"ref65","doi-asserted-by":"publisher","DOI":"10.1186\/s12860-019-0240-1"},{"key":"ref66","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty1043"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1016\/j.gene.2018.04.055"},{"key":"ref67","doi-asserted-by":"publisher","DOI":"10.1007\/s11042-016-4110-y"},{"key":"ref68","doi-asserted-by":"publisher","DOI":"10.1145\/1961189.1961199"},{"key":"ref69","doi-asserted-by":"publisher","DOI":"10.1155\/2016\/4525786"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1016\/bs.ircmb.2016.02.002","article-title":"New insights into the role of ubiquitylation of proteins","author":"mcdowell","year":"2016","journal-title":"International Review of Cell and Molecular Biology"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1533\/9781908818058"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2015.07.030"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0249396"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1109\/TENSYMP50017.2020.9230745"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.2174\/1574893614666191202152328"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1016\/j.ab.2018.04.005"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1016\/S0021-9258(19)85285-7"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.4236\/ns.2018.109035"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2016.02.020"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0408677102"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0191900"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1109\/IJCNN.2010.5596787"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-018-2518-2"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1155\/2020\/8032718"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1007\/BF00994018"},{"key":"ref54","author":"vapnik","year":"2013","journal-title":"The Nature of Statistical Learning Theory"},{"key":"ref53","volume":"5","author":"kutner","year":"2005","journal-title":"Applied Linear Statistical Models"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btm437"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-019-2632-9"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1126\/science.1175371"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1016\/S0196-9781(01)00540-X"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.aay4697"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaa255"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2013.07.024"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1038\/nchembio.495"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2015.03.029"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1101\/gr.7080508"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(02)01080-2"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1016\/j.jasms.2009.09.010"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.2174\/1573406411666141229162834"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"378","DOI":"10.1016\/S0076-6879(03)70033-0","article-title":"Assay of an intrinsic acetyltransferase activity of the transcriptional coactivator CIITA","author":"weissman","year":"2003","journal-title":"Methods in Enzymology"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(02)01278-3"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw380"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/j.ab.2015.12.009"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.2174\/1568026615666150819110421"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygeno.2019.05.027"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1016\/j.molcel.2006.06.026"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw387"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0105018"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1016\/j.ab.2017.07.011"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2013.07.009"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2010.12.024"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bth466"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1016\/j.ab.2012.03.015"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1155\/2013\/701317"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/9976468\/09543574.pdf?arnumber=9543574","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,31]],"date-time":"2024-07-31T20:28:17Z","timestamp":1722457697000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/9543574\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,11,1]]},"references-count":75,"journal-issue":{"issue":"6"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2021.3114349","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,11,1]]}}}