{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,31]],"date-time":"2026-01-31T09:07:44Z","timestamp":1769850464008,"version":"3.49.0"},"reference-count":38,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"5","license":[{"start":{"date-parts":[[2023,9,1]],"date-time":"2023-09-01T00:00:00Z","timestamp":1693526400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2023,9,1]],"date-time":"2023-09-01T00:00:00Z","timestamp":1693526400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2023,9,1]],"date-time":"2023-09-01T00:00:00Z","timestamp":1693526400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"name":"National Key Research Program","award":["2021YFA0910700"],"award-info":[{"award-number":["2021YFA0910700"]}]},{"name":"Shenzhen Science and Technology University Stable Support Program","award":["GXWD20201230155427003-20200821222112001"],"award-info":[{"award-number":["GXWD20201230155427003-20200821222112001"]}]},{"name":"Guangdong Key Area Research Program","award":["2020B0101380001"],"award-info":[{"award-number":["2020B0101380001"]}]},{"name":"Shenzhen Science and Technology Program","award":["JCYJ20200109113201726"],"award-info":[{"award-number":["JCYJ20200109113201726"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2023,9,1]]},"DOI":"10.1109\/tcbb.2021.3139841","type":"journal-article","created":{"date-parts":[[2021,12,31]],"date-time":"2021-12-31T20:38:44Z","timestamp":1640983124000},"page":"2772-2780","source":"Crossref","is-referenced-by-count":9,"title":["Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions"],"prefix":"10.1109","volume":"20","author":[{"given":"Xiaoshuai","family":"Zhang","sequence":"first","affiliation":[{"name":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lixin","family":"Wang","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0167-0714","authenticated-orcid":false,"given":"Hucheng","family":"Liu","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9740-1796","authenticated-orcid":false,"given":"Xiaofeng","family":"Zhang","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bo","family":"Liu","sequence":"additional","affiliation":[{"name":"Center for Bioinformatics, School of Computer Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yadong","family":"Wang","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, Guangdong, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8045-5264","authenticated-orcid":false,"given":"Junyi","family":"Li","sequence":"additional","affiliation":[{"name":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1126\/science.181.4096.223"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1109\/BIBM47256.2019.8983075"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymeth.2018.05.026"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt228"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.1990.9999"},{"key":"ref37","first-page":"4171","article-title":"BERT: Pre-training of deep bidirectional transformers for language understanding","author":"devlin","year":"0"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1038\/35001165"},{"key":"ref36","first-page":"1","article-title":"Semi-Supervised classification with graph convolutional networks","author":"kipf","year":"0"},{"key":"ref31","article-title":"Recurrent neural network regularization","author":"zaremba","year":"0"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.3115\/v1\/D14-1181"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0404569101"},{"key":"ref33","first-page":"6000","article-title":"Attention is all you need","author":"vaswani","year":"0"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymeth.2015.09.029"},{"key":"ref32","first-page":"1","article-title":"Empirical evaluation of gated recurrent neural networks on sequence modeling","author":"chung","year":"0"},{"key":"ref2","first-page":"25","article-title":"Gene ontology: Tool for the unification of biology. The gene ontology consortium","volume":"25","author":"ashburner","year":"2000"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx624"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkg555"},{"key":"ref16","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2105-5-178","article-title":"GOtcha: A new method for prediction of protein function assessed by the annotation of seven genomes","volume":"5","author":"martin","year":"2004","journal-title":"BMC Bioinf"},{"key":"ref38","article-title":"XLNet: Generalized autoregressive pretraining for language understanding","author":"yang","year":"0"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"436","DOI":"10.1038\/nature14539","article-title":"Deep learning","volume":"521","author":"lecun","year":"2015","journal-title":"Nature"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2014.2351821"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2010.38"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1131"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/E17-2068"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0141287"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3176"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4939-3167-5_2"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1835-8"},{"key":"ref28","first-page":"1","article-title":"Efficient estimation of word representations in vector space","author":"mikolov","year":"0"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1145\/2623330.2623732"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1145\/3308558.3313508"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymeth.2015.08.009"},{"key":"ref7","article-title":"A (not so) quick introduction to protein function prediction","author":"radivojac","year":"2013"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1186\/s13326-017-0139-8"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"506d","DOI":"10.1093\/nar\/gky1049","article-title":"UniProt: A worldwide hub of protein knowledge","volume":"47","author":"consortium","year":"2019","journal-title":"Nucleic Acids Res"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz595"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz388"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.3389\/fbioe.2020.00391"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/10274759\/09667246.pdf?arnumber=9667246","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,15]],"date-time":"2024-09-15T12:46:23Z","timestamp":1726404383000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/9667246\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,9,1]]},"references-count":38,"journal-issue":{"issue":"5"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2021.3139841","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,9,1]]}}}