{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,11]],"date-time":"2026-06-11T04:35:28Z","timestamp":1781152528629,"version":"3.54.1"},"reference-count":61,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"2","license":[{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"am","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2023,3,1]]},"DOI":"10.1109\/tcbb.2022.3173587","type":"journal-article","created":{"date-parts":[[2022,5,10]],"date-time":"2022-05-10T19:37:38Z","timestamp":1652211458000},"page":"1492-1505","source":"Crossref","is-referenced-by-count":6,"title":["Semi-Supervised Deep Learning for Cell Type Identification From Single-Cell Transcriptomic Data"],"prefix":"10.1109","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3742-0071","authenticated-orcid":false,"given":"Xishuang","family":"Dong","sequence":"first","affiliation":[{"name":"Department of Electrical and Computer Engineering, Center of Excellence in Research and Education for Big Military Data Intelligence (CREDIT Center) and Center for Computational Systems Biology (CCSB), Prairie View A&#x0026;M University, Texas A&#x0026;M University System, Prairie View, TX, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shanta","family":"Chowdhury","sequence":"additional","affiliation":[{"name":"Department of Electrical and Computer Engineering, Center of Excellence in Research and Education for Big Military Data Intelligence (CREDIT Center) and Center for Computational Systems Biology (CCSB), Prairie View A&#x0026;M University, Texas A&#x0026;M University System, Prairie View, TX, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Uboho","family":"Victor","sequence":"additional","affiliation":[{"name":"Department of Electrical and Computer Engineering, Center of Excellence in Research and Education for Big Military Data Intelligence (CREDIT Center) and Center for Computational Systems Biology (CCSB), Prairie View A&#x0026;M University, Texas A&#x0026;M University System, Prairie View, TX, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiangfang","family":"Li","sequence":"additional","affiliation":[{"name":"Department of Electrical and Computer Engineering, Center of Excellence in Research and Education for Big Military Data Intelligence (CREDIT Center) and Center for Computational Systems Biology (CCSB), Prairie View A&#x0026;M University, Texas A&#x0026;M University System, Prairie View, TX, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1577-3359","authenticated-orcid":false,"given":"Lijun","family":"Qian","sequence":"additional","affiliation":[{"name":"Department of Electrical and Computer Engineering, Center of Excellence in Research and Education for Big Military Data Intelligence (CREDIT Center) and Center for Computational Systems Biology (CCSB), Prairie View A&#x0026;M University, Texas A&#x0026;M University System, Prairie View, TX, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1101\/gr.190595.115"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.4096"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0205499"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.4644"},{"key":"ref5","article-title":"scPred: Cell type prediction at single-cell resolution","author":"Alquicira-Hernandez","year":"2018","journal-title":"bioRxiv"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1038\/s41590-018-0276-y"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz592"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkaa506"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1016\/j.cels.2016.08.011"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1795-z"},{"key":"ref11","first-page":"3111","article-title":"Distributed representations of words and phrases and their compositionality","volume-title":"Proc. Int. Conf. Neural Inf. Process. Syst.","author":"Mikolov"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v29i1.9513"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2015.05.002"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms14049"},{"key":"ref15","article-title":"Conserved cell types with divergent features between human and mouse cortex","author":"Hodge","year":"2018","journal-title":"BioRxiv"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-018-0654-5"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1007\/s40484-019-0189-2"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-020-1926-6"},{"key":"ref19","article-title":"word2vec explained: Deriving Mikolov et al.s negative-sampling word-embedding method","author":"Goldberg","year":"2014"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR.2017.528"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.24963\/ijcai.2018\/446"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1109\/ICMLA51294.2020.00050"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-018-5370-x"},{"key":"ref24","article-title":"Efficient estimation of word representations in vector space","author":"Mikolov","year":"2013"},{"key":"ref25","first-page":"166","article-title":"Word alignment modeling with context dependent deep neural network","volume-title":"Proc. 51st Annu. Meeting Assoc. Comput. Linguistics","author":"Yang"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/D15-1036"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1261\/rna.069112.118"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2018.00682"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-021-04055-1"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-10599-4_7"},{"key":"ref31","article-title":"An overview of multi-task learning in deep neural networks","author":"Ruder","year":"2017"},{"key":"ref32","article-title":"Temporal ensembling for semi-supervised learning","author":"Laine","year":"2016"},{"key":"ref33","article-title":"Exploiting similarities among languages for machine translation","author":"Mikolov","year":"2013"},{"key":"ref34","first-page":"1","article-title":"Macro- and micro-averaged evaluation measures","author":"Van Asch"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1145\/383952.383975"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1007\/978-0-387-09823-4_45"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.3115\/v1\/D14-1181"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/P16-2034"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1016\/j.cels.2019.06.004"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz592"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1109\/JBHI.2016.2565561"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1557"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1109\/JBHI.2019.2944865"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx196"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-15851-3"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1126\/science.1127647"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-34688-x"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-07931-2"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkx681"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-04368-5"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1016\/j.cels.2018.05.017"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-018-0229-2"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-020-00244-4"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkab775"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-021-04278-2"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1008885"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-021-00432-w"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1364\/BOE.399020"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-021-02480-2"},{"key":"ref60","doi-asserted-by":"publisher","DOI":"10.1109\/TKDE.2009.191"},{"key":"ref61","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-020-00233-7"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"https:\/\/ieeexplore.ieee.org\/ielam\/8857\/10091711\/9771391-aam.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/10091711\/09771391.pdf?arnumber=9771391","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,1,22]],"date-time":"2024-01-22T22:05:20Z","timestamp":1705961120000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/9771391\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,3,1]]},"references-count":61,"journal-issue":{"issue":"2"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2022.3173587","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,3,1]]}}}