{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T12:23:41Z","timestamp":1740140621336,"version":"3.37.3"},"reference-count":52,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"2","license":[{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2023,3,1]],"date-time":"2023-03-01T00:00:00Z","timestamp":1677628800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"name":"National Key R&#x0026;D Program of China","award":["2020YFA0908700"],"award-info":[{"award-number":["2020YFA0908700"]}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["U1713212","62176164","62072315","62073225","61836005","61972263","62006157"],"award-info":[{"award-number":["U1713212","62176164","62072315","62073225","61836005","61972263","62006157"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Natural Science Foundation of Guangdong Province Outstanding Youth Program","award":["2019B151502018"],"award-info":[{"award-number":["2019B151502018"]}]},{"DOI":"10.13039\/501100003453","name":"Natural Science Foundation of Guangdong Province","doi-asserted-by":"publisher","award":["2019A1515011608"],"award-info":[{"award-number":["2019A1515011608"]}],"id":[{"id":"10.13039\/501100003453","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Science and Technology Development Program of Jilin Province","award":["20170204061SF"],"award-info":[{"award-number":["20170204061SF"]}]},{"DOI":"10.13039\/100016691","name":"Guangdong Provincial Pearl River Talents Program","doi-asserted-by":"publisher","award":["2019ZT08X603"],"award-info":[{"award-number":["2019ZT08X603"]}],"id":[{"id":"10.13039\/100016691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100010877","name":"Shenzhen Science and Technology Innovation Commission","doi-asserted-by":"publisher","award":["R2020A045"],"award-info":[{"award-number":["R2020A045"]}],"id":[{"id":"10.13039\/501100010877","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Public Technology Platform of Shenzhen City","award":["GGFW2018021118145859"],"award-info":[{"award-number":["GGFW2018021118145859"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2023,3,1]]},"DOI":"10.1109\/tcbb.2022.3199758","type":"journal-article","created":{"date-parts":[[2022,8,25]],"date-time":"2022-08-25T18:35:47Z","timestamp":1661452547000},"page":"1319-1326","source":"Crossref","is-referenced-by-count":4,"title":["Predicting TF Proteins by Incorporating Evolution Information Through PSSM"],"prefix":"10.1109","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7213-2198","authenticated-orcid":false,"given":"Zhihua","family":"Du","sequence":"first","affiliation":[{"name":"Colleage of Computer Science and Software Engineering, Shenzhen University, Shenzhen, Guangdong, China"}]},{"given":"Tianyou","family":"Huang","sequence":"additional","affiliation":[{"name":"Colleage of Computer Science and Software Engineering, Shenzhen University, Shenzhen, Guangdong, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4037-5857","authenticated-orcid":false,"given":"Vladimir N.","family":"Uversky","sequence":"additional","affiliation":[{"name":"Department of Molecular Medicine and USF Health Byrd Alzheimer&#x0027;s Research Institute, Morsani College of Medicine, University of South Florida, Tampa, FL, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2208-962X","authenticated-orcid":false,"given":"Jianqiang","family":"Li","sequence":"additional","affiliation":[{"name":"Colleage of Computer Science and Software Engineering, Shenzhen University, Shenzhen, Guangdong, China"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/S1357-2725(97)00085-X"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.2174\/1574893616666210430133846"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2020.3025007"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2020.3025579"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaa435"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2019.2947461"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1016\/j.omtn.2021.02.014"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-282"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0082238"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw982"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky822"},{"volume-title":"Deep Learning","year":"2016","author":"Goodfellow","key":"ref13"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1016\/j.neunet.2014.09.003"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbw068"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaa229"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-70218-4"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/TNB.2019.2891239"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2018.2874267"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2018.2864203"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-019-44966-x"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1016\/j.omtn.2018.03.001"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-018-1459-4"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2021171118"},{"key":"ref25","first-page":"1097","article-title":"Imagenet classification with deep convolutional neural networks","volume-title":"Proc. Adv. Neural Inf. Process. Syst.","author":"Krizhevsky"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/78.650093"},{"article-title":"Neural machine translation by jointly learning to align and translate","year":"2014","author":"Bahdanau","key":"ref27"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1049"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1179"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1145\/1007730.1007733"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts565"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btaa003"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.3390\/ijms20112845"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1016\/S0968-0004(98)01298-5"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx302"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1162\/neco.1997.9.8.1735"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR.2018.00745"},{"key":"ref38","first-page":"315","article-title":"Deep sparse rectifier neural networks","volume-title":"Proc. 14th Int. Conf. Artif. Intell. Statist.","author":"Glorot"},{"key":"ref39","first-page":"448","article-title":"Batch normalization: Accelerating deep network training by reducing internal covariate shift","volume-title":"Proc. Int. Conf. Mach. Learn.","author":"Ioffe"},{"issue":"1","key":"ref40","first-page":"1929","article-title":"Dropout: A simple way to prevent neural networks from overfitting","volume":"15","author":"Srivastava","year":"2014","journal-title":"J. Mach. Learn. Res."},{"article-title":"Network in network","year":"2013","author":"Lin","key":"ref41"},{"key":"ref42","first-page":"249","article-title":"Understanding the difficulty of training deep feedforward neural networks","volume-title":"Proc. 13th Int. Conf. Artif. Intell. Statist.","author":"Glorot"},{"article-title":"Adam: A method for stochastic optimization","year":"2014","author":"Kingma","key":"ref43"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-7-208"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1142\/S0219720005000886"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1002\/1097-0134(20010101)42:1<38::AID-PROT50>3.0.CO;2-3"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbapap.2010.01.011"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky384"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1021\/bi0602718"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmb.2006.04.016"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1002\/pmic.201500177"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-24773-7"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/10091711\/09861707.pdf?arnumber=9861707","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,2,1]],"date-time":"2024-02-01T12:09:04Z","timestamp":1706789344000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/9861707\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,3,1]]},"references-count":52,"journal-issue":{"issue":"2"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2022.3199758","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"type":"print","value":"1545-5963"},{"type":"electronic","value":"1557-9964"},{"type":"electronic","value":"2374-0043"}],"subject":[],"published":{"date-parts":[[2023,3,1]]}}}