{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,21]],"date-time":"2026-07-21T20:02:17Z","timestamp":1784664137737,"version":"3.55.0"},"reference-count":49,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"4","license":[{"start":{"date-parts":[[2023,7,1]],"date-time":"2023-07-01T00:00:00Z","timestamp":1688169600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2023,7,1]],"date-time":"2023-07-01T00:00:00Z","timestamp":1688169600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2023,7,1]],"date-time":"2023-07-01T00:00:00Z","timestamp":1688169600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2023,7,1]],"date-time":"2023-07-01T00:00:00Z","timestamp":1688169600000},"content-version":"am","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"name":"Pioneer"},{"name":"Leading Goose"},{"name":"R&D Program of Zhejiang, China","award":["2022C03043"],"award-info":[{"award-number":["2022C03043"]}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["62002088"],"award-info":[{"award-number":["62002088"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100004731","name":"Natural Science Foundation of Zhejiang Province","doi-asserted-by":"crossref","award":["LY22F020009"],"award-info":[{"award-number":["LY22F020009"]}],"id":[{"id":"10.13039\/501100004731","id-type":"DOI","asserted-by":"crossref"}]},{"name":"Key Research & Development Plan of Zhejiang Province","award":["2022C01083"],"award-info":[{"award-number":["2022C01083"]}]},{"name":"National Science Foundation","award":["III-1763325"],"award-info":[{"award-number":["III-1763325"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2023,7]]},"DOI":"10.1109\/tcbb.2023.3236477","type":"journal-article","created":{"date-parts":[[2023,1,13]],"date-time":"2023-01-13T16:43:16Z","timestamp":1673628196000},"page":"2577-2586","source":"Crossref","is-referenced-by-count":5,"title":["Transferring From Textual Entailment to Biomedical Named Entity Recognition"],"prefix":"10.1109","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1607-5771","authenticated-orcid":false,"given":"Tingting","family":"Liang","sequence":"first","affiliation":[{"name":"Hangzhou Dianzi University","place":["Hangzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Congying","family":"Xia","sequence":"additional","affiliation":[{"name":"Salesforce Research","place":["Palo Alto, CA, USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ziqiang","family":"Zhao","sequence":"additional","affiliation":[{"name":"Hangzhou Dianzi University","place":["Hangzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yixuan","family":"Jiang","sequence":"additional","affiliation":[{"name":"Hangzhou Dianzi University","place":["Hangzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7565-4111","authenticated-orcid":false,"given":"Yuyu","family":"Yin","sequence":"additional","affiliation":[{"name":"Hangzhou Dianzi University","place":["Hangzhou, China"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3491-5968","authenticated-orcid":false,"given":"Philip S.","family":"Yu","sequence":"additional","affiliation":[{"name":"University of Illinois at Chicago","place":["Chicago, IL, USA"],"department":["Department of Computer Science"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"263","reference":[{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1109\/TNNLS.2022.3155486"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx761"},{"key":"ref15","article-title":"SwellShark: A generative model for biomedical named entity recognition without labeled data","author":"fries","year":"2017"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1109\/MIC.2013.20"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty356"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/6.4.357"},{"key":"ref17","article-title":"Bidirectional LSTM-CRF models for sequence tagging","author":"huang","year":"2015"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/W18-5036"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/D18-1230"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1145\/3394486.3403149"},{"key":"ref46","first-page":"3745","article-title":"Ladder variational autoencoders","author":"s\u00f8nderby","year":"2016","journal-title":"Proc Int Conf Neural Inf Process"},{"key":"ref45","article-title":"SGDR: Stochastic gradient descent with warm restarts","author":"loshchilov","year":"2016"},{"key":"ref48","first-page":"154","article-title":"Overview of the BioCreative V chemical disease relation (CDR) task","author":"wei","year":"0","journal-title":"Proc BioCreative challenge eval workshop"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/N18-1101"},{"key":"ref42","article-title":"RoBERTa: A robustly optimized bert pretraining approach","author":"liu","year":"2019"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.3115\/1654536.1654538"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR46437.2021.00252"},{"key":"ref43","first-page":"5998","article-title":"Attention is all you need","author":"vaswani","year":"2017","journal-title":"Proc Int Conf Neural Inf Process"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2013.12.006"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1162\/tacl_a_00137"},{"key":"ref7","first-page":"1","article-title":"Efficient third-order dependency parsers","author":"koo","year":"2010","journal-title":"Proc Annual Meeting of the Assoc Computational Linguistics"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1109\/TCSS.2022.3178416"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2021.103799"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaa054"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1075\/li.30.1.03nad"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx228"},{"key":"ref40","first-page":"177","article-title":"The pascal recognising textual entailment challenge","author":"dagan","year":"2005","journal-title":"Proc Mach Learn Challenges Workshop"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/N19-1079"},{"key":"ref34","first-page":"7","article-title":"Learning a named entity tagger from gazetteers with the partial perceptron","author":"carlson","year":"2009","journal-title":"Proc AAAI Spring Symp Learn Reading Learn Read"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/K19-1048"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/D18-1306"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/2020.acl-main.722"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/D19-1025"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/D18-1310"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/P19-1524"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.3389\/fcell.2020.00673"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1504\/IJDMB.2015.067954"},{"key":"ref39","first-page":"4171","article-title":"BERT: Pre-training of deep bidirectional transformers for language understanding","author":"devlin","year":"2019","journal-title":"Proc Conf North Amer Chapter Assoc Comput Linguistics Hum Lang Technol"},{"key":"ref38","article-title":"Partially-typed NER datasets integration: Connecting practice to theory","author":"zhi","year":"2020"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz682"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-017-1776-8"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/2021.findings-acl.424"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1145\/3458754"},{"key":"ref20","first-page":"1199","article-title":"Ask not what textual entailment can do for you...","author":"sammons","year":"2010","journal-title":"Proc Annual Meeting of the Assoc Computational Linguistics"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-85"},{"key":"ref21","first-page":"61","article-title":"Integrated annotation for biomedical information extraction","author":"kulick","year":"2004","journal-title":"Proc HLT-NAACL Workshop Linking Biol Literature Ontologies Databases"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/2020.acl-main.139"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.3115\/v1\/P14-1037"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/2020.repl4nlp-1.1"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"https:\/\/ieeexplore.ieee.org\/ielam\/8857\/10214206\/10017168-aam.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/10214206\/10017168.pdf?arnumber=10017168","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,7,21]],"date-time":"2026-07-21T19:04:20Z","timestamp":1784660660000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10017168\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,7]]},"references-count":49,"journal-issue":{"issue":"4"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2023.3236477","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,7]]}}}