{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,11]],"date-time":"2026-05-11T23:55:52Z","timestamp":1778543752166,"version":"3.51.4"},"reference-count":54,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"5","license":[{"start":{"date-parts":[[2023,9,1]],"date-time":"2023-09-01T00:00:00Z","timestamp":1693526400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2023,9,1]],"date-time":"2023-09-01T00:00:00Z","timestamp":1693526400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2023,9,1]],"date-time":"2023-09-01T00:00:00Z","timestamp":1693526400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2023,9,1]]},"DOI":"10.1109\/tcbb.2023.3264514","type":"journal-article","created":{"date-parts":[[2023,4,5]],"date-time":"2023-04-05T17:53:11Z","timestamp":1680717191000},"page":"3139-3153","source":"Crossref","is-referenced-by-count":7,"title":["Porting and Optimizing BWA-MEM2 Using the Fujitsu A64FX Processor"],"prefix":"10.1109","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6080-724X","authenticated-orcid":false,"given":"Rub\u00e9n","family":"Langarita","sequence":"first","affiliation":[{"name":"Barcelona Supercomputing Center, Barcelona, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2869-668X","authenticated-orcid":false,"given":"Adri\u00e0","family":"Armejach","sequence":"additional","affiliation":[{"name":"Barcelona Supercomputing Center, Barcelona, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5916-7898","authenticated-orcid":false,"given":"Pablo","family":"Ib\u00e1\u00f1ez","sequence":"additional","affiliation":[{"name":"Departamento de Inform&#x00E1;tica e Ingenier&#x00ED;a de Sistemas, Universidad de Zaragoza, Zaragoza, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4164-5078","authenticated-orcid":false,"given":"Jes\u00fas","family":"Alastruey-Bened\u00e9","sequence":"additional","affiliation":[{"name":"Departamento de Inform&#x00E1;tica e Ingenier&#x00ED;a de Sistemas, Universidad de Zaragoza, Zaragoza, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9848-8758","authenticated-orcid":false,"given":"Miquel","family":"Moret\u00f3","sequence":"additional","affiliation":[{"name":"Barcelona Supercomputing Center, Barcelona, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp698"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp324"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty191"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1109\/IPDPS.2019.00041"},{"key":"ref53","year":"0"},{"key":"ref52","year":"0"},{"key":"ref11","year":"0"},{"key":"ref54","first-page":"1","article-title":"The new Linux &#x2019;perf&#x2019; tools","volume":"18","author":"de melo","year":"2010","journal-title":"Proc Slides Linux Kongress"},{"key":"ref10","first-page":"22","article-title":"Fujitsu high performance CPU for the post-k computer","volume":"30","author":"yoshida","year":"0","journal-title":"Proc Hot Chips"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2221"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2009-10-3-r25"},{"key":"ref19","first-page":"7","article-title":"An industrial strength audio search algorithm","author":"wang","year":"2003","journal-title":"Proc Int Conf Music Inf Retrieval"},{"key":"ref18","year":"0"},{"key":"ref51","year":"0"},{"key":"ref50","year":"0"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1093\/comjnl\/bxx046","article-title":"Faster population counts using AVX2 instructions","volume":"61","author":"mu?a","year":"2018","journal-title":"Comput J"},{"key":"ref45","first-page":"279","article-title":"LMbench: Portable tools for performance analysis","author":"mcvoy","year":"1996","journal-title":"Proc USENIX Annu Tech Conf"},{"key":"ref48","year":"0"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1109\/CLUSTER49012.2020.00075"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1109\/MM.2017.35"},{"key":"ref41","article-title":"A framework for high-throughput sequence alignment using real processing-in-memory systems","author":"diab","year":"2022"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1007\/s11227-019-02842-5"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1145\/3243176.3243192"},{"key":"ref49","year":"0"},{"key":"ref8","year":"0"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab017"},{"key":"ref9","year":"0"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.1990.9999"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbq015"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1145\/375360.375365"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1016\/0196-6774(85)90023-9"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1109\/FCCM.2019.00027"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1038\/s43588-022-00201-8"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-018-2014-8"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1109\/FCCM.2012.36"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1145\/3296957.3173193"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btl582"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/16.8.699"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1145\/316542.316550"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp533"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.1002195"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1183\/13993003.00391-2017"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1145\/3470496.3527436"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1109\/MICRO50266.2020.00081"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(82)90398-9"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1016\/0001-8708(76)90202-4"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-14-S1-S13"},{"key":"ref25","article-title":"Fast gap-affine pairwise alignment using the wavefront algorithm","volume":"37","author":"marco-sola","year":"2020","journal-title":"Bioinformatics"},{"key":"ref20","first-page":"81","article-title":"Unequal by nature: A geneticist's perspective on human differences","volume":"131","author":"crow","year":"2002","journal-title":"Daedalus"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2020.3000253"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2018.2884701"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz234"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx342"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/13.2.145"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/10274759\/10093071.pdf?arnumber=10093071","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,31]],"date-time":"2024-07-31T20:27:32Z","timestamp":1722457652000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10093071\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,9,1]]},"references-count":54,"journal-issue":{"issue":"5"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2023.3264514","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,9,1]]}}}