{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,11]],"date-time":"2026-05-11T18:20:57Z","timestamp":1778523657237,"version":"3.51.4"},"reference-count":62,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"5","license":[{"start":{"date-parts":[[2023,9,1]],"date-time":"2023-09-01T00:00:00Z","timestamp":1693526400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2023,9,1]],"date-time":"2023-09-01T00:00:00Z","timestamp":1693526400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2023,9,1]],"date-time":"2023-09-01T00:00:00Z","timestamp":1693526400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["62072243"],"award-info":[{"award-number":["62072243"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["61772273"],"award-info":[{"award-number":["61772273"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["62076111"],"award-info":[{"award-number":["62076111"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Natural Science Foundation of Jiangsu"},{"name":"Foundation of National Defense Key Laboratory of Science and Technology","award":["JZX7Y202001SY000901"],"award-info":[{"award-number":["JZX7Y202001SY000901"]}]},{"name":"Postgraduate Research &#x0026; Practice Innovation Program of Jiangsu Province","award":["KYCX22_0443"],"award-info":[{"award-number":["KYCX22_0443"]}]},{"name":"National Health and Medical Research Council of Australia","award":["APP1127948"],"award-info":[{"award-number":["APP1127948"]}]},{"name":"National Health and Medical Research Council of Australia","award":["APP1144652"],"award-info":[{"award-number":["APP1144652"]}]},{"DOI":"10.13039\/501100000923","name":"Australian Research Council","doi-asserted-by":"crossref","award":["LP110200333"],"award-info":[{"award-number":["LP110200333"]}],"id":[{"id":"10.13039\/501100000923","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100000923","name":"Australian Research Council","doi-asserted-by":"crossref","award":["DP120104460"],"award-info":[{"award-number":["DP120104460"]}],"id":[{"id":"10.13039\/501100000923","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01 AI111965"],"award-info":[{"award-number":["R01 AI111965"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Major Inter-Disciplinary Research"},{"DOI":"10.13039\/501100001779","name":"Monash University","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001779","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Natural Science Foundation of Anhui Province of China","award":["KJ2018A0572"],"award-info":[{"award-number":["KJ2018A0572"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2023,9,1]]},"DOI":"10.1109\/tcbb.2023.3283985","type":"journal-article","created":{"date-parts":[[2023,6,8]],"date-time":"2023-06-08T17:48:06Z","timestamp":1686246486000},"page":"3205-3214","source":"Crossref","is-referenced-by-count":23,"title":["Prediction of Multiple Types of RNA Modifications via Biological Language Model"],"prefix":"10.1109","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1792-0121","authenticated-orcid":false,"given":"Ying","family":"Zhang","sequence":"first","affiliation":[{"name":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, Jiangsu, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5792-5379","authenticated-orcid":false,"given":"Fang","family":"Ge","sequence":"additional","affiliation":[{"name":"School of Geographic and Biologic Information, Nanjing University of Posts and Telecommunications, Nanjing, Jiangsu, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5216-3213","authenticated-orcid":false,"given":"Fuyi","family":"Li","sequence":"additional","affiliation":[{"name":"Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, VIC, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9708-1027","authenticated-orcid":false,"given":"Xibei","family":"Yang","sequence":"additional","affiliation":[{"name":"School of Computer, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8031-9086","authenticated-orcid":false,"given":"Jiangning","family":"Song","sequence":"additional","affiliation":[{"name":"Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6786-8053","authenticated-orcid":false,"given":"Dong-Jun","family":"Yu","sequence":"additional","affiliation":[{"name":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, Jiangsu, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkj084"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1126\/science.aad8711"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/nsmb.2911"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2017.05.045"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkx1030"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1126\/science.1249340"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1016\/j.stem.2015.01.016"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1105\/tpc.16.00751"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkp1117"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks1102"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1016\/j.celrep.2014.07.004"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1080\/152165400410182"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbx142"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1038\/nchembio.687"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1172\/JCI58056"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1016\/j.molcel.2012.10.015"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M113.487157"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1038\/onc.2011.449"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1016\/j.ccell.2015.08.013"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1016\/j.neulet.2015.05.025"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btaa178"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1016\/j.omtn.2018.03.012"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1007\/s11103-018-0698-9"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1038\/srep31080"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbz048"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2018.00519"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2018.0004"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.3389\/fbioe.2020.00227"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz358"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.3390\/molecules24030380"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab245"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1016\/j.omtn.2020.08.022"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1016\/j.omtn.2021.10.012"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1261\/rna.069112.118"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbz112"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.3390\/genes11050529"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab278"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.7150\/ijbs.27819"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.3934\/mbe.2019310"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-018-2516-4"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-24313-3"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btaa155"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab351"},{"key":"ref44","article-title":"BERT: Pre-training of deep bidirectional transformers for language understanding","author":"Devlin","year":"2019"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.48550\/ARXIV.1706.03762"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/P18-1031"},{"key":"ref47","article-title":"Improving language understanding by generative pre-training","author":"Radford"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab152"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1109\/BIBM52615.2021.9669841"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab005"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab083"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.18653\/v1\/W19-4828"},{"key":"ref53","article-title":"BERTology meets biology: Interpreting attention in protein language models","author":"Vig","year":"2021"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1162\/neco.1997.9.8.1735"},{"key":"ref55","first-page":"73","article-title":"Bidirectional long short-term memory networks for relation classification","volume-title":"Proc. 29th Pacific Asia Conf. Lang., Inf. Comput.","author":"Zhang","year":"2015"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.3115\/v1\/D14-1179"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkaa692"},{"key":"ref58","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkx934"},{"key":"ref59","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkx1011"},{"key":"ref60","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts565"},{"key":"ref61","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbac215"},{"key":"ref62","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkx895"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/10274759\/10146457.pdf?arnumber=10146457","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,29]],"date-time":"2024-07-29T20:30:41Z","timestamp":1722285041000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10146457\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,9,1]]},"references-count":62,"journal-issue":{"issue":"5"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2023.3283985","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,9,1]]}}}