{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,13]],"date-time":"2026-02-13T23:12:02Z","timestamp":1771024322717,"version":"3.50.1"},"reference-count":39,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"3","license":[{"start":{"date-parts":[[2024,5,1]],"date-time":"2024-05-01T00:00:00Z","timestamp":1714521600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2024,5,1]],"date-time":"2024-05-01T00:00:00Z","timestamp":1714521600000},"content-version":"am","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2024,5,1]],"date-time":"2024-05-01T00:00:00Z","timestamp":1714521600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,5,1]],"date-time":"2024-05-01T00:00:00Z","timestamp":1714521600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100008982","name":"National Science Foundation","doi-asserted-by":"publisher","award":["1724008"],"award-info":[{"award-number":["1724008"]}],"id":[{"id":"10.13039\/501100008982","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100008982","name":"National Science Foundation","doi-asserted-by":"publisher","award":["1720635"],"award-info":[{"award-number":["1720635"]}],"id":[{"id":"10.13039\/501100008982","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2024,5]]},"DOI":"10.1109\/tcbb.2024.3374595","type":"journal-article","created":{"date-parts":[[2024,3,7]],"date-time":"2024-03-07T19:29:43Z","timestamp":1709839783000},"page":"492-500","source":"Crossref","is-referenced-by-count":4,"title":["ViPRA-Haplo: <i>De Novo<\/i> Reconstruction of Viral Populations Using Paired End Sequencing Data"],"prefix":"10.1109","volume":"21","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3492-3888","authenticated-orcid":false,"given":"Weiling","family":"Li","sequence":"first","affiliation":[{"name":"Institute for Computational Biomedicine, Weill Cornell Medical College, New York, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7253-850X","authenticated-orcid":false,"given":"Raunaq","family":"Malhotra","sequence":"additional","affiliation":[{"name":"ScienceIO, New York, NY, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7685-8009","authenticated-orcid":false,"given":"Steven","family":"Wu","sequence":"additional","affiliation":[{"name":"Department of Agronomy, National Taiwan University, Taipei, Taiwan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7817-4233","authenticated-orcid":false,"given":"Manjari","family":"Jha","sequence":"additional","affiliation":[{"name":"School of Electrical Engineering and Computer Science, Pennsylvania State University, University Park, PA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8327-7317","authenticated-orcid":false,"given":"Allen","family":"Rodrigo","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, University of Auckland, Private Bag, New Zealand"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4147-2410","authenticated-orcid":false,"given":"Mary","family":"Poss","sequence":"additional","affiliation":[{"name":"Department of Hematology and Oncology, School of Medicine, University of Virginia, Charlottesville, VA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0001-7142-5538","authenticated-orcid":false,"given":"Raj","family":"Acharya","sequence":"additional","affiliation":[{"name":"Luddy School of Informatics, Computing, and Engineering, Indiana University Bloomington, Bloomington, IN, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv022"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1098\/rspb.1996.0231"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2007.03.023"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.micro.51.1.151"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.05023-11"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2020.07.032"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1016\/j.meegid.2020.104277"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaa101"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbs081"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1038\/srep02837"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-13-475"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv120"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/ve\/vey007"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1101\/gr.215038.116"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty202"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1007\/s40484-019-0181-x"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1003515"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu295"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu754"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btn298"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbaa123"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-15-S9-S5"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-04921-2_10"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu170"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv415"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt086"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1056\/nejmoa2001017"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2020.06.043"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1038\/s41423-020-0400-4"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1016\/j.lfs.2020.118056"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1126\/science.abe1502"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1186\/s12967-020-02392-y"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1016\/j.csbj.2017.07.001"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt020"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv022"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2011.0151"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku537"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-16-S18-S3"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"https:\/\/ieeexplore.ieee.org\/ielam\/8857\/10550082\/10462503-aam.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/8857\/10550082\/10462503.pdf?arnumber=10462503","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,7]],"date-time":"2024-09-07T05:39:10Z","timestamp":1725687550000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10462503\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,5]]},"references-count":39,"journal-issue":{"issue":"3"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2024.3374595","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,5]]}}}