{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,6]],"date-time":"2026-04-06T20:51:29Z","timestamp":1775508689146,"version":"3.50.1"},"reference-count":49,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"2","license":[{"start":{"date-parts":[[2026,3,1]],"date-time":"2026-03-01T00:00:00Z","timestamp":1772323200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2026,3,1]],"date-time":"2026-03-01T00:00:00Z","timestamp":1772323200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,3,1]],"date-time":"2026-03-01T00:00:00Z","timestamp":1772323200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Comput. Biol. Bioinform."],"published-print":{"date-parts":[[2026,3]]},"DOI":"10.1109\/tcbb.2024.3433378","type":"journal-article","created":{"date-parts":[[2024,8,19]],"date-time":"2024-08-19T13:39:39Z","timestamp":1724074779000},"page":"589-597","source":"Crossref","is-referenced-by-count":1,"title":["AirLift: A Fast and Comprehensive Technique for Remapping Alignments Between Reference Genomes"],"prefix":"10.1109","volume":"23","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6153-9008","authenticated-orcid":false,"given":"Jeremie S.","family":"Kim","sequence":"first","affiliation":[{"name":"Department of Information Technology and Electrical Engineering, ETH Zurich, Zürich, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6548-7863","authenticated-orcid":false,"given":"Can","family":"Firtina","sequence":"additional","affiliation":[{"name":"Department of Information Technology and Electrical Engineering, ETH Zurich, Zürich, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4475-6945","authenticated-orcid":false,"given":"Meryem Banu","family":"Cavlak","sequence":"additional","affiliation":[{"name":"Department of Information Technology and Electrical Engineering, ETH Zurich, Zürich, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3665-6285","authenticated-orcid":false,"given":"Damla Senol","family":"Cali","sequence":"additional","affiliation":[{"name":"Carnegie Mellon University, Pittsburgh, PA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nastaran","family":"Hajinazar","sequence":"additional","affiliation":[{"name":"Department of Information Technology and Electrical Engineering, ETH Zurich, Zürich, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6117-3701","authenticated-orcid":false,"given":"Mohammed","family":"Alser","sequence":"additional","affiliation":[{"name":"Department of Information Technology and Electrical Engineering, ETH Zurich, Zürich, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5443-0706","authenticated-orcid":false,"given":"Can","family":"Alkan","sequence":"additional","affiliation":[{"name":"Bilkent University, Ankara, Türkiye"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0075-2312","authenticated-orcid":false,"given":"Onur","family":"Mutlu","sequence":"additional","affiliation":[{"name":"Department of Information Technology and Electrical Engineering, ETH Zurich, Zürich, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/nature18964"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/s41588-018-0273-y"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1659-6"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bby017"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1527"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/JPROC.2016.2645402"},{"key":"ref7","article-title":"RefSeq curation and annotation of the human reference genome","year":"2024"},{"key":"ref8","article-title":"Genome reference consortium introduction to patches","year":"2024"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2547-7"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygeno.2017.01.005"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1038\/nature15393"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/gigascience\/gix038"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr477"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1109\/JPROC.2015.2455551"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-021-02443-7"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1109\/MM.2020.3013728"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1093\/nargab\/lqad004"},{"key":"ref18","article-title":"Broad institute sequences its 100,000th whole human genome on national DNA day","year":"2018"},{"key":"ref19","article-title":"Harnessing the flood: Scaling up data science in the big genomics era","author":"Ulrich","year":"2017"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms3274"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3098"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1101\/gr.092197.109"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1038\/nature07484"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1038\/nature08795"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-015-2328-0"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-019-5854-3"},{"key":"ref27","article-title":"UCSC LiftOver: Lift genome annotations","year":"2024"},{"key":"ref28","article-title":"CrossMap: Convert genome coordinates between assemblies","author":"Zhao","year":"2022"},{"key":"ref29","article-title":"Segment liftover","author":"Gao","year":"2021"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.12688\/f1000research.14148.2"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt730"},{"key":"ref32","article-title":"NCBI Genome Remapping Service","year":"2023"},{"key":"ref33","article-title":"Galaxy","year":"2024"},{"key":"ref34","article-title":"Pyliftover","author":"Tretyakov","year":"2024"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab396"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-023-02069-6"},{"key":"ref37","article-title":"SAM\/BAM and related specifications"},{"key":"ref38","article-title":"Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM","author":"Li","year":"2013"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1101\/gr.107524.110"},{"key":"ref40","article-title":"Blat suite program specifications and user guide","year":"2024"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac554"},{"key":"ref42","doi-asserted-by":"crossref","DOI":"10.1093\/bioinformatics\/btac554","article-title":"FastRemap: A tool for quickly remapping reads between genome assemblies","author":"Kim","year":"2022"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1002\/0471250953.bi1110s43"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr330"},{"key":"ref45","article-title":"Variant quality score recalibration (VQSR)","year":"2024"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1101\/gr.210500.116"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.2835"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-017-1290-3"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw139"}],"container-title":["IEEE Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/10723156\/11474684\/10638724.pdf?arnumber=10638724","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,4,6]],"date-time":"2026-04-06T19:55:26Z","timestamp":1775505326000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10638724\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,3]]},"references-count":49,"journal-issue":{"issue":"2"},"URL":"https:\/\/doi.org\/10.1109\/tcbb.2024.3433378","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2021.02.16.431517","asserted-by":"object"}]},"ISSN":["2998-4165"],"issn-type":[{"value":"2998-4165","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,3]]}}}