{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,25]],"date-time":"2026-03-25T15:28:07Z","timestamp":1774452487118,"version":"3.50.1"},"reference-count":50,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"1","license":[{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["W2411054"],"award-info":[{"award-number":["W2411054"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["U21A20521"],"award-info":[{"award-number":["U21A20521"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["62271178"],"award-info":[{"award-number":["62271178"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Research &amp; Practice Innovation Program of Jiangsu Province","award":["KYCX23_2524"],"award-info":[{"award-number":["KYCX23_2524"]}]},{"name":"National Foreign Expert Project of China","award":["G2023144009L"],"award-info":[{"award-number":["G2023144009L"]}]},{"name":"Zhejiang Provincial Natural Science Foundation of China","award":["LR23F010002"],"award-info":[{"award-number":["LR23F010002"]}]},{"name":"Wuxi Health Commission Precision Medicine Project","award":["J202106"],"award-info":[{"award-number":["J202106"]}]},{"name":"Jiangsu Provincial Six Talent Peaks Project","award":["YY-124"],"award-info":[{"award-number":["YY-124"]}]},{"name":"construction project of Shanghai Key Laboratory of Molecular Imaging","award":["18DZ2260400"],"award-info":[{"award-number":["18DZ2260400"]}]},{"name":"multiyear research grant","award":["MYRG-GRG2023-00150-FHS-UMDF"],"award-info":[{"award-number":["MYRG-GRG2023-00150-FHS-UMDF"]}]},{"name":"multiyear research grant","award":["MYRG-GRG2024-00146-FHS"],"award-info":[{"award-number":["MYRG-GRG2024-00146-FHS"]}]},{"DOI":"10.13039\/501100004733","name":"Universidade de Macau","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004733","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Macau SAR, China"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Comput. Biol. Bioinform."],"published-print":{"date-parts":[[2025,1]]},"DOI":"10.1109\/tcbbio.2024.3521983","type":"journal-article","created":{"date-parts":[[2025,1,3]],"date-time":"2025-01-03T19:18:16Z","timestamp":1735931896000},"page":"298-309","source":"Crossref","is-referenced-by-count":2,"title":["UPSST: Unsupervised Pathology Domain Identification by Integrating Tissue Morphology, Imputing and Clustering of Spatial Transcriptomics With GAT"],"prefix":"10.1109","volume":"22","author":[{"given":"Guiyun","family":"Chen","sequence":"first","affiliation":[{"name":"School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, China"}]},{"given":"Xiaoyan","family":"Hong","sequence":"additional","affiliation":[{"name":"School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, China"}]},{"given":"Lei","family":"Zhang","sequence":"additional","affiliation":[{"name":"Department of Vascular Surgery, Zhejiang Provincial People&#x0027;s Hospital Bijie Hospital, Bijie, Guizhou, China"}]},{"given":"Longzhen","family":"Ding","sequence":"additional","affiliation":[{"name":"School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0435-6453","authenticated-orcid":false,"given":"Lihua","family":"Li","sequence":"additional","affiliation":[{"name":"Institute of Biomedical Engineering and Instrumentation, Hangzhou Dianzi University, Hangzhou, China"}]},{"given":"Chunjuan","family":"Jiang","sequence":"additional","affiliation":[{"name":"Department of Nuclear Medicine, Fudan University Shanghai Cancer Center, Shanghai, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2354-0232","authenticated-orcid":false,"given":"Jianming","family":"Ni","sequence":"additional","affiliation":[{"name":"Department of Radiology, Jiangnan University Medical Center, Wuxi, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4832-3354","authenticated-orcid":false,"given":"Kai","family":"Miao","sequence":"additional","affiliation":[{"name":"Cancer Center, Faculty of Health Sciences, University of Macau, Taipa, Macau, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6554-1404","authenticated-orcid":false,"given":"Xiang","family":"Pan","sequence":"additional","affiliation":[{"name":"School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, China"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-021-03634-9"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-022-01409-2"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-022-01075-1"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/s42003-020-01341-1"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-021-01203-6"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1002\/ar.22944"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.2892"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-019-1049-y"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1126\/science.aaa6090"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1126\/science.aat5691"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1126\/science.1250212"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1136\/archdischild-2013-304340"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1126\/science.aaw1219"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-019-0548-y"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1038\/s41593-020-00787-0"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1126\/science.aan6827"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2020.05.039"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1186\/s13058-019-1242-9"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2024-3"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2021.04.048"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1109\/72.363440"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-019-41695-z"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1088\/1742-5468\/2008\/10\/P10008"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-021-00935-2"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-021-02286-2"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-023-43120-6"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-021-01255-8"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-022-35288-0"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-024-01283-x"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-017-1305-0"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty1044"},{"key":"ref32","article-title":"Deep graph infomax","volume-title":"Proc. Int. Conf. Learn. Representations","author":"Velikovi"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-07931-2"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1038\/s43588-022-00266-5"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1007\/BF01908075"},{"key":"ref36","first-page":"410","article-title":"V-Measure: A conditional entropy-based external cluster evaluation measure","volume-title":"Proc. 2007 Joint Conf. Empirical Methods Natural Lang. Process. Comput. Natural Lang. Learn.","author":"Rosenberg"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-024-02215-8"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-022-34879-1"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-022-33619-9"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.30084"},{"key":"ref41","article-title":"Ribo-seQC: Comprehensive analysis of cytoplasmic and organellar ribosome profiling data","author":"Donegan","year":"2019","journal-title":"bioRxiv"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.2147\/OTT.S176101"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1111\/j.1349-7006.2010.01577.x"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkac901"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2020.604655"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1177\/11779322221079232"},{"key":"ref47","article-title":"","year":"2023"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1663-x"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1126\/science.aat5691"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1038\/nature05453"}],"container-title":["IEEE Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/10723156\/10820042\/10819948.pdf?arnumber=10819948","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,2,6]],"date-time":"2025-02-06T18:37:17Z","timestamp":1738867037000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10819948\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,1]]},"references-count":50,"journal-issue":{"issue":"1"},"URL":"https:\/\/doi.org\/10.1109\/tcbbio.2024.3521983","relation":{},"ISSN":["2998-4165"],"issn-type":[{"value":"2998-4165","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,1]]}}}