{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,6]],"date-time":"2025-06-06T04:40:02Z","timestamp":1749184802511,"version":"3.41.0"},"reference-count":36,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"3","license":[{"start":{"date-parts":[[2025,5,1]],"date-time":"2025-05-01T00:00:00Z","timestamp":1746057600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2025,5,1]],"date-time":"2025-05-01T00:00:00Z","timestamp":1746057600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,5,1]],"date-time":"2025-05-01T00:00:00Z","timestamp":1746057600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["62032013"],"award-info":[{"award-number":["62032013"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Central Universities","award":["N2323020"],"award-info":[{"award-number":["N2323020"]}]},{"DOI":"10.13039\/501100003787","name":"Natural Science Foundation of Hebei Province","doi-asserted-by":"publisher","award":["F2021501020"],"award-info":[{"award-number":["F2021501020"]}],"id":[{"id":"10.13039\/501100003787","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Hebei Province Higher Education Scientific Research Project","award":["QN2024167"],"award-info":[{"award-number":["QN2024167"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Comput. Biol. Bioinform."],"published-print":{"date-parts":[[2025,5]]},"DOI":"10.1109\/tcbbio.2025.3555625","type":"journal-article","created":{"date-parts":[[2025,4,14]],"date-time":"2025-04-14T17:37:28Z","timestamp":1744652248000},"page":"1141-1151","source":"Crossref","is-referenced-by-count":0,"title":["gShapeLnoc: A Graph Network Incorporating Shapelet Embedding Model for LncRNA Subcellular Localization"],"prefix":"10.1109","volume":"22","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2803-4291","authenticated-orcid":false,"given":"Changyong","family":"Yu","sequence":"first","affiliation":[{"name":"College of Computer Science and Engineering, Northeastern University, Shenyang, China"}]},{"given":"Xuxian","family":"Zhou","sequence":"additional","affiliation":[{"name":"College of Computer Science and Engineering, Northeastern University, Shenyang, China"}]},{"ORCID":"https:\/\/orcid.org\/0009-0007-2492-9884","authenticated-orcid":false,"given":"Xinyao","family":"Chen","sequence":"additional","affiliation":[{"name":"College of Computer Science and Engineering, Northeastern University, Shenyang, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9644-0435","authenticated-orcid":false,"given":"Haitao","family":"Ma","sequence":"additional","affiliation":[{"name":"College of Computer Science and Engineering, Northeastern University, Shenyang, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1080-0859","authenticated-orcid":false,"given":"Yuhai","family":"Zhao","sequence":"additional","affiliation":[{"name":"College of Computer Science and Engineering, Northeastern University, Shenyang, China"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/nature12986"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1186\/s13046-016-0420-1"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gks296"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2013.02.012"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1016\/j.molcel.2019.02.008"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-022-09034-1"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty085"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty508"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygeno.2020.02.011"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1007\/s11704-021-1015-3"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1109\/access.2020.3007317"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.3390\/ijms21197271"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbac565"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab127"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab360"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.26599\/bdma.2024.9020002"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btad752"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbac509"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1261\/rna.063172.117"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2019.05.027"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1261\/rna.060814.117"},{"key":"ref22","first-page":"2022","article-title":"A graph representation of gapped patterns in phage sequences for graph convolutional network","author":"Wang","year":"2022","journal-title":"bioRxiv"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1038\/nature15394"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1145\/1557019.1557122"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1109\/icde.2018.00052"},{"key":"ref26","first-page":"13266","article-title":"Representing long-range context for graph neural networks with global attention","volume-title":"Proc. Adv. Neural Inf. Process. Syst.","author":"Wu"},{"article-title":"Automatic differentiation in pytorch","year":"2017","author":"Paszke","key":"ref27"},{"article-title":"Experiment tracking with weights and biases","year":"2020","author":"Biewald","key":"ref28"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbac243"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1038\/nature25757"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1080\/15476286.2019.1620061"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1261\/rna.074161.119"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2007-8-2-r24"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1038\/nature12311"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1038\/s41594-020-0385-9"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1038\/s41420-021-00661-3"}],"container-title":["IEEE Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/10723156\/11025532\/10964517.pdf?arnumber=10964517","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,6]],"date-time":"2025-06-06T04:20:13Z","timestamp":1749183613000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10964517\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,5]]},"references-count":36,"journal-issue":{"issue":"3"},"URL":"https:\/\/doi.org\/10.1109\/tcbbio.2025.3555625","relation":{},"ISSN":["2998-4165"],"issn-type":[{"type":"electronic","value":"2998-4165"}],"subject":[],"published":{"date-parts":[[2025,5]]}}}