{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T19:18:03Z","timestamp":1773343083623,"version":"3.50.1"},"reference-count":41,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"4","license":[{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32100509"],"award-info":[{"award-number":["32100509"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["12301620"],"award-info":[{"award-number":["12301620"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["82020108002"],"award-info":[{"award-number":["82020108002"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["82225005"],"award-info":[{"award-number":["82225005"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003399","name":"Science and Technology Commission of Shanghai Municipality","doi-asserted-by":"publisher","award":["23410750100"],"award-info":[{"award-number":["23410750100"]}],"id":[{"id":"10.13039\/501100003399","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003399","name":"Science and Technology Commission of Shanghai Municipality","doi-asserted-by":"publisher","award":["20DZ2255400"],"award-info":[{"award-number":["20DZ2255400"]}],"id":[{"id":"10.13039\/501100003399","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003399","name":"Science and Technology Commission of Shanghai Municipality","doi-asserted-by":"publisher","award":["21XD1421300"],"award-info":[{"award-number":["21XD1421300"]}],"id":[{"id":"10.13039\/501100003399","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Program of Shanghai Education Commission","award":["19SG34"],"award-info":[{"award-number":["19SG34"]}]},{"name":"AI for Science Program of Shanghai Education Commission","award":["24RGZN10"],"award-info":[{"award-number":["24RGZN10"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Comput. Biol. Bioinform."],"published-print":{"date-parts":[[2025,7]]},"DOI":"10.1109\/tcbbio.2025.3576169","type":"journal-article","created":{"date-parts":[[2025,6,3]],"date-time":"2025-06-03T13:50:03Z","timestamp":1748958603000},"page":"1935-1946","source":"Crossref","is-referenced-by-count":1,"title":["diffMIN: Reconstructing Sample-Specific Differential Gene Regulatory Networks Based on Mutual Information"],"prefix":"10.1109","volume":"22","author":[{"ORCID":"https:\/\/orcid.org\/0009-0006-5678-5515","authenticated-orcid":false,"given":"Songwei","family":"Ai","sequence":"first","affiliation":[{"name":"School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, China"}]},{"given":"Yiwei","family":"Zhou","sequence":"additional","affiliation":[{"name":"School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, China"}]},{"given":"Wenkui","family":"Zou","sequence":"additional","affiliation":[{"name":"School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, China"}]},{"given":"Emeli","family":"Chatterjee","sequence":"additional","affiliation":[{"name":"Cardiovascular Division of the Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3874-0744","authenticated-orcid":false,"given":"Guoping","family":"Li","sequence":"additional","affiliation":[{"name":"Cardiovascular Division of the Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2471-0686","authenticated-orcid":false,"given":"Jifan","family":"Shi","sequence":"additional","affiliation":[{"name":"Research Institute of Intelligent Complex Systems, Fudan University, Shanghai, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9202-0003","authenticated-orcid":false,"given":"Junjie","family":"Xiao","sequence":"additional","affiliation":[{"name":"Institute of Geriatrics (Shanghai University), Affiliated Nantong Hospital of Shanghai University (The Sixth People&#x2019;s Hospital of Nantong), School of Medicine, Shanghai University, Nantong, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8633-0072","authenticated-orcid":false,"given":"Juan","family":"Zhao","sequence":"additional","affiliation":[{"name":"School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, China"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0806007105"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/j.stemcr.2022.11.010"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-023-38637-9"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-021-00869-9"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1038\/nrg2641"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-022-01588-5"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-023-01938-4"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-021-24110-y"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1186\/s12943-022-01596-8"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.tcb.2022.04.011"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw772"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz172"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2113178118"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1016\/j.gpb.2020.05.005"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbad180"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1522586113"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbad032"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1186\/s12885-019-6235-7"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq670"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1007\/s00018-017-2679-6"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1002\/wics.1508"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbagrm.2018.09.010"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-8-111"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0050436"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/18.suppl_2.S231"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-06639-7"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1126\/science.aar3131"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2019.01.006"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.2859"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1507125112"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-016-0945-9"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-016-1033-x"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmet.2016.08.018"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1007\/bf01908075"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.3390\/ijms23042363"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1161\/cir.0000000000001123"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1161\/circresaha.120.318495"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1093\/cvr\/cvz291"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1161\/circgen.118.002243"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1039\/c4mb00413b"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-021-87074-5"}],"container-title":["IEEE Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/10723156\/11121392\/11023081.pdf?arnumber=11023081","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,8,9]],"date-time":"2025-08-09T04:42:44Z","timestamp":1754714564000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/11023081\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,7]]},"references-count":41,"journal-issue":{"issue":"4"},"URL":"https:\/\/doi.org\/10.1109\/tcbbio.2025.3576169","relation":{},"ISSN":["2998-4165"],"issn-type":[{"value":"2998-4165","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,7]]}}}