{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,8]],"date-time":"2026-04-08T06:55:58Z","timestamp":1775631358209,"version":"3.50.1"},"reference-count":37,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"6","license":[{"start":{"date-parts":[[2025,11,1]],"date-time":"2025-11-01T00:00:00Z","timestamp":1761955200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2025,11,1]],"date-time":"2025-11-01T00:00:00Z","timestamp":1761955200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,11,1]],"date-time":"2025-11-01T00:00:00Z","timestamp":1761955200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["62373348"],"award-info":[{"award-number":["62373348"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Tianshan Talent Training Program","award":["2023TSYCLJ0021"],"award-info":[{"award-number":["2023TSYCLJ0021"]}]},{"name":"Pioneer Hundred Talents Program of Chinese Academy of Sciences"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Comput. Biol. Bioinform."],"published-print":{"date-parts":[[2025,11]]},"DOI":"10.1109\/tcbbio.2025.3610881","type":"journal-article","created":{"date-parts":[[2025,9,16]],"date-time":"2025-09-16T17:33:21Z","timestamp":1758044001000},"page":"3557-3563","source":"Crossref","is-referenced-by-count":10,"title":["DeepHIV: A Sequence-Based Deep Learning Model for Predicting HIV-1 Protease Cleavage Sites"],"prefix":"10.1109","volume":"22","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9701-5377","authenticated-orcid":false,"given":"Dongxu","family":"Li","sequence":"first","affiliation":[{"name":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China"}]},{"given":"Zhenfeng","family":"Li","sequence":"additional","affiliation":[{"name":"School of Computer Science and Artificial Intelligence, Wuhan University of Technology, Wuhan, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8200-6016","authenticated-orcid":false,"given":"Bowei","family":"Zhao","sequence":"additional","affiliation":[{"name":"College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5468-6085","authenticated-orcid":false,"given":"Xiaorui","family":"Su","sequence":"additional","affiliation":[{"name":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China"}]},{"ORCID":"https:\/\/orcid.org\/0009-0007-8980-0141","authenticated-orcid":false,"given":"Guodong","family":"Li","sequence":"additional","affiliation":[{"name":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1591-8549","authenticated-orcid":false,"given":"Lun","family":"Hu","sequence":"additional","affiliation":[{"name":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1002634"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1126\/science.2537531"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1016\/j.virol.2004.10.023"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1186\/s12977-015-0200-6"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1016\/j.patrec.2006.01.014"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu810"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab036"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1006\/jtbi.1995.0254"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.10017"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bth144"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.79.19.12477-12486.2005"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1016\/j.ab.2008.01.012"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2019.2914208"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz721"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1109\/JBHI.2024.3357979"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1109\/TFUZZ.2023.3338565"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2023.3273567"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-024-03357-w"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx670"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bby028"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2020.103376"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2021.658078"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab526"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1016\/j.patcog.2017.10.013"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.48550\/ARXIV.1706.03762"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/TPAMI.2010.95"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1038\/s42256-020-0205-2"},{"issue":"1","key":"ref28","first-page":"629","article-title":"Breaking the curse of dimensionality with convex neural networks","volume":"18","author":"Bach","year":"2017","journal-title":"J. Mach. Learn. Res."},{"key":"ref29","first-page":"1","article-title":"Convolutional kernel networks","volume-title":"Proc. Adv. Neural Inf. Process. Syst.","author":"Mairal"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz768"},{"key":"ref31","volume-title":"Deep Learning With Keras","author":"Gulli","year":"2017"},{"key":"ref32","first-page":"265","article-title":"TensorFlow: A system for large-scale machine learning","volume-title":"Proc. 12th USENIX Symp. Operating Syst. Des. Implementation","author":"Abadi"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.5555\/1953048.2078195"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1002\/prot.21415"},{"key":"ref35","article-title":"UCI machine learning repository","author":"Dua","year":"2019"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1145\/1143844.1143874"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1021\/bi00137a015"}],"container-title":["IEEE Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/10723156\/11296745\/11168114.pdf?arnumber=11168114","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,12,11]],"date-time":"2025-12-11T18:44:59Z","timestamp":1765478699000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/11168114\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,11]]},"references-count":37,"journal-issue":{"issue":"6"},"URL":"https:\/\/doi.org\/10.1109\/tcbbio.2025.3610881","relation":{},"ISSN":["2998-4165"],"issn-type":[{"value":"2998-4165","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,11]]}}}