{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T07:29:19Z","timestamp":1770794959770,"version":"3.50.0"},"reference-count":37,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"1","license":[{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Comput. Biol. Bioinform."],"published-print":{"date-parts":[[2026,1]]},"DOI":"10.1109\/tcbbio.2025.3621138","type":"journal-article","created":{"date-parts":[[2025,10,15]],"date-time":"2025-10-15T17:36:07Z","timestamp":1760549767000},"page":"1-13","source":"Crossref","is-referenced-by-count":0,"title":["Nearest Neighbor CCP-Based Molecular Sequence Analysis"],"prefix":"10.1109","volume":"23","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8121-2168","authenticated-orcid":false,"given":"Sarwan","family":"Ali","sequence":"first","affiliation":[{"name":"Irving Medical Center, Columbia University, New York, NY, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1443-2192","authenticated-orcid":false,"given":"Prakash","family":"Chourasia","sequence":"additional","affiliation":[{"name":"Georgia State University, Atlanta, GA, USA"}]},{"given":"Bipin","family":"Koirala","sequence":"additional","affiliation":[{"name":"Georgia Institute of Technology, Atlanta, GA, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4329-0234","authenticated-orcid":false,"given":"Murray","family":"Patterson","sequence":"additional","affiliation":[{"name":"Georgia State University, Atlanta, GA, USA"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms14049"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1186\/gm479"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1038\/35015709"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3176"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1016\/j.eswa.2025.126859"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.2307\/2348634"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1145\/2872427.2883041"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1162\/089976698300017467"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1016\/j.knosys.2024.112479"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1109\/T-C.1969.222678"},{"issue":"66-71","key":"ref11","article-title":"Dimensionality reduction: A comparative review","volume":"10","author":"Van Der Maaten","year":"2009","journal-title":"J. Mach. Learn. Res."},{"key":"ref12","article-title":"CCP: Correlated clustering and projection for dimensionality reduction","author":"Hozumi","year":"2022"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0311791"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1145\/1497577.1497578"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1145\/1150402.1150408"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-80599-9_23"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msaa015"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbrc.2020.09.010"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.3390\/biology11030418"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/BigData52589.2021.9671848"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2022.3206284"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v32i1.11784"},{"key":"ref23","article-title":"A vector representation of dna sequences using locality sensitive hashing","author":"Shi","year":"2019","journal-title":"BioRxiv"},{"key":"ref24","article-title":"Hash2vec, feature hashing for word embeddings","author":"Argerich","year":"2016"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1145\/3337821.3337919"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1162\/neco.1997.9.7.1493"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1007\/978-981-99-7074-2_35"},{"key":"ref28","first-page":"604","article-title":"Approx. nearest neighbors: Towards removing the curse of dimensionality","volume-title":"Proc. Symp. Theory Comput.","author":"Indyk"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-020-1926-6"},{"issue":"11","key":"ref32","first-page":"2579","article-title":"Visualizing data using t-SNE","volume":"9","author":"Van der M","year":"2008","journal-title":"J. Mach. Learn. Res."},{"key":"ref33","first-page":"478","article-title":"Unsupervised deep embedding for clustering analysis","volume-title":"Proc. Int. Conf. Mach. Learn.","author":"Xie"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-019-3220-8"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac020"},{"key":"ref36","first-page":"9689","article-title":"Evaluating protein transfer learning with TAPE","volume-title":"Proc. Adv. Neural Inf. Process. Syst.","author":"Rao"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr859"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1142\/S0219720005001004"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1126\/science.286.5439.531"}],"container-title":["IEEE Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/10723156\/11372637\/11204801.pdf?arnumber=11204801","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,9]],"date-time":"2026-02-09T21:04:23Z","timestamp":1770671063000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/11204801\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1]]},"references-count":37,"journal-issue":{"issue":"1"},"URL":"https:\/\/doi.org\/10.1109\/tcbbio.2025.3621138","relation":{},"ISSN":["2998-4165"],"issn-type":[{"value":"2998-4165","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,1]]}}}