{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,10]],"date-time":"2026-02-10T16:01:15Z","timestamp":1770739275052,"version":"3.49.0"},"reference-count":48,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"1","license":[{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"}],"funder":[{"name":"National Key R&D Program of China","award":["2020YFA0908700"],"award-info":[{"award-number":["2020YFA0908700"]}]},{"DOI":"10.13039\/501100021171","name":"Basic and Applied Basic Research Foundation of Guangdong Province","doi-asserted-by":"publisher","award":["2025A1515010278"],"award-info":[{"award-number":["2025A1515010278"]}],"id":[{"id":"10.13039\/501100021171","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["61902255"],"award-info":[{"award-number":["61902255"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Basic Research Project of Shenzhen Science and Technology Program","award":["JCYJ20190808163417094"],"award-info":[{"award-number":["JCYJ20190808163417094"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Comput. Biol. Bioinform."],"published-print":{"date-parts":[[2026,1]]},"DOI":"10.1109\/tcbbio.2025.3638901","type":"journal-article","created":{"date-parts":[[2025,12,1]],"date-time":"2025-12-01T18:24:20Z","timestamp":1764613460000},"page":"163-175","source":"Crossref","is-referenced-by-count":0,"title":["Spatial Hierarchical Protein-Protein Interaction Site Prediction Using Squeeze-and-Excitation Capsule Networks"],"prefix":"10.1109","volume":"23","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6669-6595","authenticated-orcid":false,"given":"Weipeng","family":"Lv","sequence":"first","affiliation":[{"name":"College of Computer Science and Software Engineering and the National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University, Shenzhen, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2772-2348","authenticated-orcid":false,"given":"Changkun","family":"Jiang","sequence":"additional","affiliation":[{"name":"College of Computer Science and Software Engineering and the National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University, Shenzhen, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2208-962X","authenticated-orcid":false,"given":"Jianqiang","family":"Li","sequence":"additional","affiliation":[{"name":"College of Computer Science and Software Engineering and the National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University, Shenzhen, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1109\/BIBM55620.2022.9995658"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/B978-0-12-800168-4.00004-4"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbx022"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1038\/nchembio.119"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bby088"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1155\/2014\/147648"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1002\/prot.24479"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.2174\/1574893614666191105155713"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.2000.4092"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq302"},{"key":"ref11","article-title":"SPRINGS: Prediction of protein-protein interaction sites using artificial neural networks","volume":"2","author":"Singh","year":"2014","journal-title":"PeerJ PrePrints"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx005"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz699"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-022-04624-y"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-S8-S8"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btaa750"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btab643"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbab578"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbad122"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1007\/s12539-022-00543-x"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.34133\/research.0240"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btae588"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-024-05964-7"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1093\/gigascience\/giaf114"},{"key":"ref25","first-page":"3859","article-title":"Dynamic routing between capsules","volume-title":"Proc. Int. Conf. Neural Inf. Process. Syst.","author":"Sabour"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR.2018.00745"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/28.1.235"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1002\/prot.22106"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2014.01.028"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1186\/1472-6807-8-21"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1016\/j.neucom.2016.02.022"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/16.4.404"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkv332"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1002\/prot.25674"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.2174\/138920308785132712"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1002\/prot.21248"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1016\/j.neucom.2019.05.013"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.5555\/3104322.3104425"},{"key":"ref40","first-page":"265","article-title":"TensorFlow: A system for large-scale machine learning","volume-title":"Proc. 12th USENIX Conf. Operating Syst. Des. Implementation","author":"Abadi"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1109\/ICOACS.2016.7563084"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btl303"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1002\/prot.23175"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1109\/BMEI.2013.6747021"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.1997.1234"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(71)90324-X"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkab1006"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1079"}],"container-title":["IEEE Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/10723156\/11372637\/11271551.pdf?arnumber=11271551","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,9]],"date-time":"2026-02-09T21:04:24Z","timestamp":1770671064000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/11271551\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1]]},"references-count":48,"journal-issue":{"issue":"1"},"URL":"https:\/\/doi.org\/10.1109\/tcbbio.2025.3638901","relation":{},"ISSN":["2998-4165"],"issn-type":[{"value":"2998-4165","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,1]]}}}