{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,25]],"date-time":"2025-09-25T16:28:26Z","timestamp":1758817706179,"version":"3.37.3"},"reference-count":41,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"1","license":[{"start":{"date-parts":[[2019,1,1]],"date-time":"2019-01-01T00:00:00Z","timestamp":1546300800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/3.0\/legalcode"}],"funder":[{"DOI":"10.13039\/100011102","name":"Seventh Framework Programme","doi-asserted-by":"publisher","award":["625631"],"award-info":[{"award-number":["625631"]}],"id":[{"id":"10.13039\/100011102","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000289","name":"Cancer Research UK","doi-asserted-by":"publisher","award":["C5255\/A18085"],"award-info":[{"award-number":["C5255\/A18085"]}],"id":[{"id":"10.13039\/501100000289","id-type":"DOI","asserted-by":"publisher"}]},{"name":"CRUK Oxford Centre","award":["C5255\/A15935"],"award-info":[{"award-number":["C5255\/A15935"]}]},{"DOI":"10.13039\/501100006561","name":"Oxford Cancer Imaging Centre","doi-asserted-by":"publisher","award":["C5255\/A16466"],"award-info":[{"award-number":["C5255\/A16466"]}],"id":[{"id":"10.13039\/501100006561","id-type":"DOI","asserted-by":"publisher"}]},{"name":"EPSRC Systems Biology Doctoral Training Centre, Oxford","award":["EP\/G03706X\/1"],"award-info":[{"award-number":["EP\/G03706X\/1"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Med. Imaging"],"published-print":{"date-parts":[[2019,1]]},"DOI":"10.1109\/tmi.2017.2725639","type":"journal-article","created":{"date-parts":[[2017,8,9]],"date-time":"2017-08-09T18:11:49Z","timestamp":1502302309000},"page":"1-10","source":"Crossref","is-referenced-by-count":14,"title":["Segmentation of Vasculature From Fluorescently Labeled Endothelial Cells in Multi-Photon Microscopy Images"],"prefix":"10.1109","volume":"38","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4992-2319","authenticated-orcid":false,"given":"Russell","family":"Bates","sequence":"first","affiliation":[]},{"given":"Benjamin","family":"Irving","sequence":"additional","affiliation":[]},{"given":"Bostjan","family":"Markelc","sequence":"additional","affiliation":[]},{"given":"Jakob","family":"Kaeppler","sequence":"additional","affiliation":[]},{"given":"Graham","family":"Brown","sequence":"additional","affiliation":[]},{"given":"Ruth J.","family":"Muschel","sequence":"additional","affiliation":[]},{"given":"Sir Michael","family":"Brady","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8139-3480","authenticated-orcid":false,"given":"Vicente","family":"Grau","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6107-3009","authenticated-orcid":false,"given":"Julia A.","family":"Schnabel","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"ref39","first-page":"109","article-title":"Efficient inference in fully connected CRFs with Gaussian edge potentials","author":"kr\u00e4henb\u00fchl","year":"2012","journal-title":"Proc NIPS"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1109\/34.232073"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1109\/TMI.2005.862743"},{"key":"ref32","first-page":"2902","article-title":"Neuron geometry extraction by perceptual grouping in ssTEM images","author":"kaynig","year":"2010","journal-title":"Proc CVPR"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1023\/A:1010933404324"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1109\/ICCV.2001.937505"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1109\/ICPR.1994.576361"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1006\/cviu.1998.0680"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"832","DOI":"10.1109\/34.709601","article-title":"The random subspace method for constructing decision forests","volume":"20","author":"ho","year":"1998","journal-title":"IEEE Trans Pattern Anal Mach Intell"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1016\/j.media.2006.06.003"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2818.2003.01205.x"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1561\/0600000035","article-title":"Decision forests: A unified framework for classification, regression, density estimation, manifold learning and semi-supervised learning","volume":"7","author":"criminisi","year":"2012","journal-title":"Found Trends Comput Graph Vis"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1109\/TMI.2009.2022086"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1016\/j.media.2014.11.007"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1016\/j.patcog.2016.09.031"},{"journal-title":"Deep learning convolutional networks for multiphoton microscopy vasculature segmentation","year":"2016","author":"teikari","key":"ref14"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1023\/B:VISI.0000022288.19776.77"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1109\/34.868688"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1109\/TPAMI.2012.120"},{"key":"ref18","first-page":"609","article-title":"Automated colorectal tumour segmentation in DCE-MRI using supervoxel neighbourhood contrast characteristics","volume":"8673","author":"irving","year":"2014","journal-title":"Medical Image Computing and Computer-Assisted Intervention"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1016\/j.media.2016.03.002"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1117\/12.535112"},{"key":"ref4","first-page":"130","article-title":"Multiscale vessel enhancement filtering","author":"frangi","year":"1998","journal-title":"Medical Image Computing and Computer-Assisted Intervention"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1038\/nprot.2013.026","article-title":"Surgical implantation of an abdominal imaging window for intravital microscopy","volume":"8","author":"ritsma","year":"2013","journal-title":"Nature Protocols"},{"key":"ref3","doi-asserted-by":"crossref","DOI":"10.1201\/9780429258794","author":"weinberg","year":"2013","journal-title":"The Biology of Cancer"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/BIA.1998.692517"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1523\/ENEURO.0049-14.2014"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1016\/j.media.2010.08.003"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1016\/j.media.2009.07.011"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1007\/BFb0029242","article-title":"Multi-scale line segmentation with automatic estimation of width, contrast and tangential direction in 2D and 3D medical images","author":"lorenz","year":"1997","journal-title":"CVRMed-MRCAS"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/j.media.2014.07.003"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1111\/cns.12268"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(00)81683-9"},{"key":"ref20","first-page":"101341d","article-title":"Hessian-assisted supervoxel: Structure-oriented voxel clustering and application to mediastinal lymph node detection from CT volumes","volume":"10134","author":"oda","year":"2017","journal-title":"Proc SPIE"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1109\/ICCV.2009.5459175"},{"key":"ref21","first-page":"1","article-title":"Over-segmentation of 3D medical image volumes based on monogenic cues","author":"holzer","year":"2014","journal-title":"Proc CVWW"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1109\/TMI.2011.2171705"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1109\/TMI.2015.2494582"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1007\/s11263-008-0202-0"},{"key":"ref26","first-page":"352","article-title":"Coupling oriented hidden Markov random field model with local clustering for segmenting blood vessels and measuring spatial structures in images of tumor microenvironment","author":"zhu","year":"2011","journal-title":"Proc IEEE Int Conf Bioinformatics and Biomedicine"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1098\/rsfs.2013.0015"}],"container-title":["IEEE Transactions on Medical Imaging"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/42\/8594679\/08006267.pdf?arnumber=8006267","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,27]],"date-time":"2022-01-27T13:57:56Z","timestamp":1643291876000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/8006267\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,1]]},"references-count":41,"journal-issue":{"issue":"1"},"URL":"https:\/\/doi.org\/10.1109\/tmi.2017.2725639","relation":{},"ISSN":["0278-0062","1558-254X"],"issn-type":[{"type":"print","value":"0278-0062"},{"type":"electronic","value":"1558-254X"}],"subject":[],"published":{"date-parts":[[2019,1]]}}}