{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T05:07:09Z","timestamp":1782968829974,"version":"3.54.5"},"reference-count":31,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"10","license":[{"start":{"date-parts":[[2016,10,1]],"date-time":"2016-10-01T00:00:00Z","timestamp":1475280000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"name":"Severo Ochoa Program","award":["SEV-2015-0493"],"award-info":[{"award-number":["SEV-2015-0493"]}]},{"name":"Spanish Government","award":["PHBP14\/00081"],"award-info":[{"award-number":["PHBP14\/00081"]}]},{"name":"Spanish Ministry of Education, Culture and Sport","award":["TIN2015-65316"],"award-info":[{"award-number":["TIN2015-65316"]}]},{"DOI":"10.13039\/501100006280","name":"Spanish Ministry of Science and Technology","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100006280","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100002809","name":"Generalitat de Catalunya","doi-asserted-by":"publisher","award":["2014-SGR1051"],"award-info":[{"award-number":["2014-SGR1051"]}],"id":[{"id":"10.13039\/501100002809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003593","name":"CNPq","doi-asserted-by":"publisher","award":["242800\/2012-2"],"award-info":[{"award-number":["242800\/2012-2"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003593","name":"CNPq","doi-asserted-by":"publisher","award":["313931\/2013-5"],"award-info":[{"award-number":["313931\/2013-5"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003593","name":"CNPq","doi-asserted-by":"publisher","award":["211456\/2013-6"],"award-info":[{"award-number":["211456\/2013-6"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003593","name":"CNPq","doi-asserted-by":"publisher","award":["305208\/2014-4"],"award-info":[{"award-number":["305208\/2014-4"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003593","name":"CNPq","doi-asserted-by":"publisher","award":["446297\/2014-3"],"award-info":[{"award-number":["446297\/2014-3"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Parallel Distrib. Syst."],"published-print":{"date-parts":[[2016,10,1]]},"DOI":"10.1109\/tpds.2016.2515597","type":"journal-article","created":{"date-parts":[[2016,1,7]],"date-time":"2016-01-07T14:07:14Z","timestamp":1452175634000},"page":"2838-2850","source":"Crossref","is-referenced-by-count":58,"title":["CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters"],"prefix":"10.1109","volume":"27","author":[{"given":"Edans Flavius de Oliveira","family":"Sandes","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guillermo","family":"Miranda","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xavier","family":"Martorell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eduard","family":"Ayguade","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"George","family":"Teodoro","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5191-5209","authenticated-orcid":false,"given":"Alba Cristina Magalhaes","family":"Melo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"263","reference":[{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1016\/j.eswa.2014.01.030"},{"key":"ref30","year":"0"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt410"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1109\/TPDS.2012.194"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1109\/CCGrid.2014.18"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gku1158"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1038\/srep11534"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1101\/gr.926603"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-015-0530-3"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiolchem.2014.08.010"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-S9-S15"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1145\/1693453.1693473"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-181"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1007\/s10766-012-0209-6"},{"key":"ref27","author":"pfister","year":"1995","journal-title":"In Search of Clusters The Coming Battle in Lowly Parallel Computing"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1109\/TPDS.2004.86"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-08019-2_40"},{"key":"ref29","first-page":"655","article-title":"Viability of the parallel prefix algorithm for sequence alignment on massively parallel GPUs","author":"dicker","year":"0","journal-title":"Proc Int Conf Parallel Distrib Process Techn Appl"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1109\/TPDS.2008.254"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1109\/CLUSTER.2014.6968772"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1109\/TC.2009.133"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(81)90087-5"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1109\/TPDS.2011.239"},{"key":"ref1","author":"mount","year":"2004","journal-title":"Bioinformatics Sequence and Genome Analysis"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/IPDPS.2011.114"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-14-117"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1186\/1756-0500-3-93"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/4.1.11"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1145\/2555243.2555280"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1145\/360825.360861"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(82)90398-9"}],"container-title":["IEEE Transactions on Parallel and Distributed Systems"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/71\/7563479\/07374729.pdf?arnumber=7374729","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,1,12]],"date-time":"2022-01-12T11:43:29Z","timestamp":1641987809000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/7374729\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,10,1]]},"references-count":31,"journal-issue":{"issue":"10"},"URL":"https:\/\/doi.org\/10.1109\/tpds.2016.2515597","relation":{},"ISSN":["1045-9219"],"issn-type":[{"value":"1045-9219","type":"print"}],"subject":[],"published":{"date-parts":[[2016,10,1]]}}}