{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,7]],"date-time":"2026-03-07T19:07:55Z","timestamp":1772910475005,"version":"3.50.1"},"reference-count":57,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"1","license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"name":"Genome Canada and Ontario Genomics"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Visual. Comput. Graphics"],"published-print":{"date-parts":[[2018,1]]},"DOI":"10.1109\/tvcg.2017.2745118","type":"journal-article","created":{"date-parts":[[2017,8,29]],"date-time":"2017-08-29T18:21:53Z","timestamp":1504030913000},"page":"371-381","source":"Crossref","is-referenced-by-count":26,"title":["PhenoLines: Phenotype Comparison Visualizations for Disease Subtyping via Topic Models"],"prefix":"10.1109","volume":"24","author":[{"given":"Michael","family":"Glueck","sequence":"first","affiliation":[]},{"given":"Mahdi Pakdaman","family":"Naeini","sequence":"additional","affiliation":[]},{"given":"Finale","family":"Doshi-Velez","sequence":"additional","affiliation":[]},{"given":"Fanny","family":"Chevalier","sequence":"additional","affiliation":[]},{"given":"Azam","family":"Khan","sequence":"additional","affiliation":[]},{"given":"Daniel","family":"Wigdor","sequence":"additional","affiliation":[]},{"given":"Michael","family":"Brudno","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1137\/0105003"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1145\/2678025.2701407"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2015.2467622"},{"key":"ref32","first-page":"gkw1039","article-title":"The human phenotype ontology in 2017","author":"k\u00f6hler","year":"2016","journal-title":"Nucleic Acids Research"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1016\/j.ajhg.2009.09.003"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1001\/jama.296.2.212"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1145\/2089094.2089101"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1109\/VAST.2014.7042494"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0159621"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1111\/j.1467-8659.2012.03108.x"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1109\/ACCESS.2016.2618775"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1179\/000870403235002042"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1145\/1401890.1401937"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1145\/1143844.1143859"},{"key":"ref1","author":"arbabi","year":"2016","journal-title":"Personal communication"},{"key":"ref20","first-page":"1","article-title":"Cross-corpora unsupervised learning of trajectories in autism spectrum disorders","volume":"17","author":"elibol","year":"2016","journal-title":"Journal of Machine Learning Research"},{"key":"ref22","article-title":"The Topic Browser: An interactive tool for browsing topic models","volume":"2","author":"gardner","year":"2010","journal-title":"Conference on Neural Information Processing Systems Workshop on Challenges of Data Visualization"},{"key":"ref21","author":"ganesan","year":"2015","journal-title":"LDAExplore Visualizing Topic Models Generated Using Latent Dirichlet Allocation"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2015.2467733"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2016.2598469"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/PACIFICVIS.2011.5742371"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1145\/2089094.2089099"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.3115\/v1\/W14-3110"},{"key":"ref51","first-page":"1385","article-title":"Sharing clusters among related groups: Hierarchical dirichlet processes","author":"teh","year":"2005","journal-title":"Advances in neural information processing systems"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1177\/1473871614526077"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1145\/1978942.1979196"},{"key":"ref55","first-page":"41","article-title":"Coverage of phenotypes in standard terminologies","author":"winnenburg","year":"2014","journal-title":"Joint Bio-Ontologies and BioLINK ISMB"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1145\/1150402.1150450"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.1145\/1357054.1357129"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2016.2598591"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.jvlc.2003.06.003"},{"key":"ref11","first-page":"612","article-title":"Topic model diagnostics: Assessing domain relevance via topical alignment","author":"chuang","year":"2013","journal-title":"Proceedings of the International Conference on Machine Learning"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2009.111"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1145\/2254556.2254572"},{"key":"ref13","first-page":"24120","article-title":"TextFlow: Towards better understanding of evolving topics in text","volume":"17","author":"cui","year":"2011","journal-title":"IEEE Transactions on Visualization and Computer Graphics"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2014.2346433"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1186\/s13326-016-0047-3"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1542\/peds.2013-0819"},{"key":"ref17","doi-asserted-by":"crossref","DOI":"10.1609\/aaai.v29i1.9603","article-title":"Graph-sparse lda: a topic model with structured sparsity","author":"doshi-velez","year":"2015","journal-title":"Twenty-Ninth AAAI Conference on Artificial Intelligence"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/VAST.2011.6102461"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"2002","DOI":"10.1109\/TVCG.2013.162","article-title":"HierarchicalTopics: Visually exploring large text collections using topic hierarchies","volume":"19","author":"dou","year":"2013","journal-title":"IEEE Transactions on Visualization and Computer Graphics"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh061"},{"key":"ref3","first-page":"993","article-title":"Latent dirichl et al.ocation","volume":"3","author":"blei","year":"2003","journal-title":"Journal of Machine Learning Research"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2013.124"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2011.185"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1145\/2783258.2783365"},{"key":"ref7","first-page":"1","article-title":"Reading tea leaves: How humans interpret topic models","volume":"31","author":"chang","year":"2009","journal-title":"Proceedings of the conference on Neural Information Processing Systems"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1109\/MC.2013.38"},{"key":"ref9","article-title":"Exemplar-based visualization of large document corpus","volume":"15","author":"chen","year":"2009","journal-title":"IEEE Transactions on Visualization and Computer Graphics"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1561\/1100000039"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-25364-5_22"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2012.213"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1101\/mcs.a000372"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2015.10.001"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1016\/j.websem.2010.03.005"},{"key":"ref44","first-page":"45","article-title":"Software Framework for Topic Modelling with Large Corpora","author":"?eh??ek","year":"2010","journal-title":"Proceedings of the LREC 2010 Workshop on New Challenges for NLP Frameworks"},{"key":"ref43","first-page":"76","article-title":"LifeLines: using visualization to enhance navigation and analysis of patient records","author":"plaisant","year":"1998","journal-title":"Proceedings of the American Medical Informatics Association Symposium"}],"container-title":["IEEE Transactions on Visualization and Computer Graphics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/2945\/8165924\/08019821.pdf?arnumber=8019821","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,8,1]],"date-time":"2022-08-01T22:34:30Z","timestamp":1659393270000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/8019821\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,1]]},"references-count":57,"journal-issue":{"issue":"1"},"URL":"https:\/\/doi.org\/10.1109\/tvcg.2017.2745118","relation":{},"ISSN":["1077-2626"],"issn-type":[{"value":"1077-2626","type":"print"}],"subject":[],"published":{"date-parts":[[2018,1]]}}}