{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,19]],"date-time":"2026-03-19T02:31:08Z","timestamp":1773887468725,"version":"3.50.1"},"reference-count":52,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"1","license":[{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/legalcode"}],"funder":[{"DOI":"10.13039\/501100004052","name":"King Abdullah University of Science and Technology","doi-asserted-by":"crossref","award":["BAS\/1\/1680-01-01"],"award-info":[{"award-number":["BAS\/1\/1680-01-01"]}],"id":[{"id":"10.13039\/501100004052","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Visual. Comput. Graphics"],"published-print":{"date-parts":[[2025,1]]},"DOI":"10.1109\/tvcg.2024.3456404","type":"journal-article","created":{"date-parts":[[2024,9,10]],"date-time":"2024-09-10T19:06:21Z","timestamp":1725995181000},"page":"558-568","source":"Crossref","is-referenced-by-count":1,"title":["DiffFit: Visually-Guided Differentiable Fitting of Molecule Structures to a Cryo-EM Map"],"prefix":"10.1109","volume":"31","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4610-8730","authenticated-orcid":false,"given":"Deng","family":"Luo","sequence":"first","affiliation":[{"name":"Visual Computing Center at King Abdullah University of Science and Technology (KAUST), Saudi Arabia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0009-7444-445X","authenticated-orcid":false,"given":"Zainab","family":"Alsuwaykit","sequence":"additional","affiliation":[{"name":"Visual Computing Center at King Abdullah University of Science and Technology (KAUST), Saudi Arabia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5864-1888","authenticated-orcid":false,"given":"Dawar","family":"Khan","sequence":"additional","affiliation":[{"name":"Visual Computing Center at King Abdullah University of Science and Technology (KAUST), Saudi Arabia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8077-4692","authenticated-orcid":false,"given":"Ond\u0159ej","family":"Strnad","sequence":"additional","affiliation":[{"name":"Visual Computing Center at King Abdullah University of Science and Technology (KAUST), Saudi Arabia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7953-8644","authenticated-orcid":false,"given":"Tobias","family":"Isenberg","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Paris-Saclay, CNRS, Inria, LISN, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4248-6574","authenticated-orcid":false,"given":"Ivan","family":"Viola","sequence":"additional","affiliation":[{"name":"Visual Computing Center at King Abdullah University of Science and Technology (KAUST), Saudi Arabia"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.3389\/fmolb.2022.935411"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1007\/s10586-024-04281-1"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1016\/j.tibs.2014.10.005"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR52729.2023.01894"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1109\/IEMBS.1995.575214"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2018.2864851"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2023.3286582"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.4340"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1088\/1361-6560\/ab843e"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.str.2024.04.017"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btl625"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1016\/j.jsb.2006.06.010"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-024-45861-4"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-019-08991-8"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1201\/9781420042474"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-021-03819-2"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1109\/TPAMI.2017.2658574"},{"key":"ref18","article-title":"Adam:\n                        A method for stochastic optimization","author":"Kingma","year":"2017","journal-title":"arXiv\n                        preprint"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1007\/s11263-008-0168-y"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2024.3361488"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2021.3106328"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2007.1003"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1023\/b:visi.0000029664.99615.94"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1016\/j.sbi.2019.05.024"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1007\/s10278-012-9561-8"},{"key":"ref26","article-title":"Finding antibodies in cryo-EM densities with\n                        CrAI","author":"Mallet","year":"2023","journal-title":"bioRxiv preprint"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1109\/TMI.2003.809072"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-020-2829-0"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2020.3030415"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.20084"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2017525118"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1109\/TMI.2003.815867"},{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1038\/s41596-021-00640-z"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1145\/3414685.3417830"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1109\/VAST.2014.7042491"},{"key":"ref36","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2023.3337642"},{"key":"ref37","doi-asserted-by":"publisher","DOI":"10.1016\/j.cagd.2018.06.005"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1109\/ICCV.2019.00467"},{"key":"ref39","doi-asserted-by":"publisher","DOI":"10.1016\/j.neucom.2006.01.007"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jcim.3c01033"},{"key":"ref41","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2015.2467293"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1038\/s41592-018-0173-1"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1109\/83.887976"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2022.3209411"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1515\/9783110567861-007"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.1038\/s41586-023-06140-2"},{"key":"ref47","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3287"},{"key":"ref48","article-title":"Detecting protein and DNA\/RNA structures in cryo-EM maps of\n                        intermediate resolution using deep learning","author":"Wang","year":"2020","journal-title":"Nat\n                        Commun"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1609\/aaai.v33i01.33011230"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1109\/TVCG.2010.124"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1038\/s41589-023-01535-8"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1145\/3197517.3201285"}],"container-title":["IEEE Transactions on Visualization and Computer Graphics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx8\/2945\/10766346\/10672541.pdf?arnumber=10672541","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,23]],"date-time":"2025-01-23T18:41:33Z","timestamp":1737657693000},"score":1,"resource":{"primary":{"URL":"https:\/\/ieeexplore.ieee.org\/document\/10672541\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,1]]},"references-count":52,"journal-issue":{"issue":"1"},"URL":"https:\/\/doi.org\/10.1109\/tvcg.2024.3456404","relation":{},"ISSN":["1077-2626","1941-0506","2160-9306"],"issn-type":[{"value":"1077-2626","type":"print"},{"value":"1941-0506","type":"electronic"},{"value":"2160-9306","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,1]]}}}