{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,31]],"date-time":"2025-12-31T20:15:45Z","timestamp":1767212145177,"version":"3.41.0"},"reference-count":33,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"1","license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"}],"funder":[{"name":"Spanish Ministry of Economy and Competitiveness and the European Regional Development Fund","award":["TIN2016-76259-P (PROTEIN Project)"],"award-info":[{"award-number":["TIN2016-76259-P (PROTEIN Project)"]}]},{"name":"Post-Doctoral Fellowship by Funda\u00e7\u00e3o para a Ci\u00eaehat;ncia e a Tecnologia, Portugal","award":["SFRH\/BPD\/100872\/2014"],"award-info":[{"award-number":["SFRH\/BPD\/100872\/2014"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE Trans. Cybern."],"published-print":{"date-parts":[[2018,1]]},"DOI":"10.1109\/tcyb.2016.2621129","type":"journal-article","created":{"date-parts":[[2016,11,2]],"date-time":"2016-11-02T18:20:25Z","timestamp":1478110825000},"page":"41-51","source":"Crossref","is-referenced-by-count":14,"title":["A Characteristic-Based Framework for Multiple Sequence Aligners"],"prefix":"10.1109","volume":"48","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2999-4304","authenticated-orcid":false,"given":"Alvaro","family":"Rubio-Largo","sequence":"first","affiliation":[]},{"given":"Leonardo","family":"Vanneschi","sequence":"additional","affiliation":[]},{"given":"Mauro","family":"Castelli","sequence":"additional","affiliation":[]},{"given":"Miguel A.","family":"Vega-Rodriguez","sequence":"additional","affiliation":[]}],"member":"263","reference":[{"key":"ref33","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-6"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btl472"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"321","DOI":"10.3233\/ISB-00245","article-title":"Analysis and comparison of benchmarks for multiple sequence alignment","volume":"6","author":"blackshields","year":"2006","journal-title":"In Silico Biol"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bth493"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1186\/1748-7188-3-6"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.2000.4042"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1101\/gr.2821705"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq338"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh340"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkf436"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkl514"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-62703-646-7_3"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1109\/ICNN.1995.488968"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1007\/s10462-012-9373-8"},{"key":"ref28","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/28.1.235"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1517\/14622416.3.1.131"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1002\/prot.20527"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1007\/BF02603120"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/22.22.4673"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1007\/BF02257378"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000392"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0409137102"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1126\/science.7280687"},{"key":"ref9","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkn1006"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(86)90252-4"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1007\/s11047-007-9049-5"},{"article-title":"The irace package, iterated race for automatic algorithm configuration","year":"2011","author":"l\u00f3pez-ib\u00e1\u00f1ez","key":"ref22"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1007\/s11047-007-9050-z"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1109\/TCYB.2014.2387067"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1613\/jair.2861","article-title":"ParamILS: An automatic algorithm configuration framework","volume":"36","author":"hutter","year":"2009","journal-title":"J Artif Intell Res"},{"journal-title":"Muscle","year":"2015","author":"edgar","key":"ref26"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1109\/TCYB.2015.2475174"}],"container-title":["IEEE Transactions on Cybernetics"],"original-title":[],"link":[{"URL":"http:\/\/xplorestaging.ieee.org\/ielx7\/6221036\/8207702\/07731158.pdf?arnumber=7731158","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,11]],"date-time":"2025-06-11T23:27:31Z","timestamp":1749684451000},"score":1,"resource":{"primary":{"URL":"http:\/\/ieeexplore.ieee.org\/document\/7731158\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,1]]},"references-count":33,"journal-issue":{"issue":"1"},"URL":"https:\/\/doi.org\/10.1109\/tcyb.2016.2621129","relation":{},"ISSN":["2168-2267","2168-2275"],"issn-type":[{"type":"print","value":"2168-2267"},{"type":"electronic","value":"2168-2275"}],"subject":[],"published":{"date-parts":[[2018,1]]}}}