{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,31]],"date-time":"2025-12-31T06:25:53Z","timestamp":1767162353379,"version":"build-2238731810"},"reference-count":27,"publisher":"Wiley","issue":"6","license":[{"start":{"date-parts":[[2020,5,13]],"date-time":"2020-05-13T00:00:00Z","timestamp":1589328000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["17H04075"],"award-info":[{"award-number":["17H04075"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["19K16638"],"award-info":[{"award-number":["19K16638"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","award":["19K23845"],"award-info":[{"award-number":["19K23845"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Microbiology and Immunology"],"published-print":{"date-parts":[[2020,6]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    We performed RNA sequencing on\n                    <jats:italic>Bordetella pertussis<\/jats:italic>\n                    , the causative agent of whooping cough, and identified nine novel small RNAs (sRNAs) that were transcribed during the bacterial colonization of murine tracheas. Among them, four sRNAs were more strongly expressed\n                    <jats:italic>in vivo<\/jats:italic>\n                    than\n                    <jats:italic>in vitro<\/jats:italic>\n                    . Moreover, the expression of eight sRNAs was not regulated by the BvgAS two\u2010component system, which is the master regulator for the expression of genes contributing to the bacterial infection. The present results suggest a BvgAS\u2010independent gene regulatory system involving the sRNAs that is active during\n                    <jats:italic>B. pertussis<\/jats:italic>\n                    infection.\n                  <\/jats:p>","DOI":"10.1111\/1348-0421.12791","type":"journal-article","created":{"date-parts":[[2020,3,30]],"date-time":"2020-03-30T05:37:57Z","timestamp":1585546677000},"page":"469-475","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":9,"title":["RETRACTED: Expression of small RNAs of\n                    <i>Bordetella pertussis<\/i>\n                    colonizing murine tracheas"],"prefix":"10.1111","volume":"64","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6340-864X","authenticated-orcid":false,"given":"Yukihiro","family":"Hiramatsu","sequence":"first","affiliation":[{"name":"Department of Molecular Bacteriology, Research Institute for Microbial Diseases Osaka University  Suita Osaka Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Koichiro","family":"Suzuki","sequence":"additional","affiliation":[{"name":"Department of Molecular Bacteriology, Research Institute for Microbial Diseases Osaka University  Suita Osaka Japan"},{"name":"The Research Foundation for Microbial Diseases of Osaka University (BIKEN)  Suita Osaka Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daisuke","family":"Motooka","sequence":"additional","affiliation":[{"name":"Department of Infection Metagenomics, Genome Information Research Center, Research Institute for Microbial Diseases Osaka University  Suita Osaka Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shota","family":"Nakamura","sequence":"additional","affiliation":[{"name":"Department of Infection Metagenomics, Genome Information Research Center, Research Institute for Microbial Diseases Osaka University  Suita Osaka Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1592-5861","authenticated-orcid":false,"given":"Yasuhiko","family":"Horiguchi","sequence":"additional","affiliation":[{"name":"Department of Molecular Bacteriology, Research Institute for Microbial Diseases Osaka University  Suita Osaka Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2020,5,13]]},"reference":[{"key":"e_1_2_5_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tim.2013.11.007"},{"key":"e_1_2_5_3_1","doi-asserted-by":"publisher","DOI":"10.1097\/INF.0000000000000795"},{"key":"e_1_2_5_4_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro3235"},{"key":"e_1_2_5_5_1","doi-asserted-by":"publisher","DOI":"10.1093\/infdis\/jiy125"},{"key":"e_1_2_5_6_1","doi-asserted-by":"publisher","DOI":"10.1128\/mSphereDirect.00154-19"},{"key":"e_1_2_5_7_1","doi-asserted-by":"publisher","DOI":"10.1093\/femspd\/ftx011"},{"key":"e_1_2_5_8_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tig.2005.05.008"},{"key":"e_1_2_5_9_1","doi-asserted-by":"publisher","DOI":"10.1101\/gad.901001"},{"key":"e_1_2_5_10_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-12-207"},{"key":"e_1_2_5_11_1","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4939-0473-0_34"},{"key":"e_1_2_5_12_1","doi-asserted-by":"publisher","DOI":"10.1080\/15476286.2018.1462655"},{"key":"e_1_2_5_13_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tig.2012.10.004"},{"key":"e_1_2_5_14_1","doi-asserted-by":"publisher","DOI":"10.1093\/femsre\/fuv016"},{"key":"e_1_2_5_15_1","doi-asserted-by":"publisher","DOI":"10.1261\/rna.067306.118"},{"key":"e_1_2_5_16_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2009.01.043"},{"key":"e_1_2_5_17_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2010.06.008"},{"key":"e_1_2_5_18_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature16547"},{"key":"e_1_2_5_19_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0168915"},{"key":"e_1_2_5_20_1","doi-asserted-by":"publisher","DOI":"10.1099\/00221287-63-2-211"},{"key":"e_1_2_5_21_1","doi-asserted-by":"publisher","DOI":"10.1111\/1348-0421.12742"},{"key":"e_1_2_5_22_1","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.66.6.2762-2768.1998"},{"key":"e_1_2_5_23_1","doi-asserted-by":"publisher","DOI":"10.1111\/1348-0421.12356"},{"key":"e_1_2_5_24_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.76.4.1648"},{"key":"e_1_2_5_25_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1609565114"},{"key":"e_1_2_5_26_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0038925"},{"key":"e_1_2_5_27_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1600320113"},{"key":"e_1_2_5_28_1","doi-asserted-by":"publisher","DOI":"10.1128\/mSphere.00093-19"}],"updated-by":[{"DOI":"10.1111\/1348-0421.13214","type":"retraction","label":"Retraction","source":"publisher","updated":{"date-parts":[[2025,3,31]],"date-time":"2025-03-31T00:00:00Z","timestamp":1743379200000}}],"container-title":["Microbiology and Immunology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1111%2F1348-0421.12791","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/1348-0421.12791","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/full-xml\/10.1111\/1348-0421.12791","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/am-pdf\/10.1111%2F1348-0421.12791","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/1348-0421.12791","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,4,11]],"date-time":"2025-04-11T08:31:34Z","timestamp":1744360294000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/1348-0421.12791"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,5,13]]},"references-count":27,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2020,6]]}},"alternative-id":["10.1111\/1348-0421.12791"],"URL":"https:\/\/doi.org\/10.1111\/1348-0421.12791","archive":["Portico"],"relation":{},"ISSN":["0385-5600","1348-0421"],"issn-type":[{"value":"0385-5600","type":"print"},{"value":"1348-0421","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,5,13]]},"assertion":[{"value":"2020-01-29","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2020-03-24","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2020-05-13","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}