{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T18:13:47Z","timestamp":1789582427489,"version":"build-2803163510"},"reference-count":53,"publisher":"Wiley","issue":"6","license":[{"start":{"date-parts":[[2016,1,21]],"date-time":"2016-01-21T00:00:00Z","timestamp":1453334400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"content-domain":{"domain":["enviromicro-journals.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Environmental Microbiology"],"published-print":{"date-parts":[[2016,6]]},"abstract":"<jats:title>Summary<\/jats:title>\n                  <jats:p>\n                    Application of nitrogen fertilizer has altered terrestrial ecosystems. Ammonia is nitrified by ammonia and nitrite\u2010oxidizing microorganisms, converting ammonia to highly mobile nitrate, contributing to the loss of nitrogen, soil nutrients and production of detrimental nitrogen oxides. Mitigating these costs is of critical importance to a growing bioenergy industry. To resolve the impact of management on nitrifying populations, amplicon sequencing of markers associated with ammonia and nitrite\u2010oxidizing taxa (ammonia monooxygenase\u2010\n                    <jats:italic>amo<\/jats:italic>\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>A<\/jats:italic>\n                    <\/jats:styled-content>\n                    , nitrite oxidoreductase\u2010\n                    <jats:italic>nxr<\/jats:italic>\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>B<\/jats:italic>\n                    <\/jats:styled-content>\n                    , respectively) was conducted from long\u2010term managed and nearby native soils in Eastern Washington,\n                    <jats:styled-content style=\"fixed-case\">USA<\/jats:styled-content>\n                    . Native nitrifier population structure was altered profoundly by management. The native ammonia\u2010oxidizing archaeal community (comprised primarily by\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>N<\/jats:italic>\n                    <\/jats:styled-content>\n                    <jats:italic>itrososphaera<\/jats:italic>\n                    sister subclusters 1.1 and 2) was displaced by populations of\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>N<\/jats:italic>\n                    <\/jats:styled-content>\n                    <jats:italic>itrosopumilus<\/jats:italic>\n                    ,\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>N<\/jats:italic>\n                    <\/jats:styled-content>\n                    <jats:italic>itrosotalea<\/jats:italic>\n                    and different assemblages of\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>N<\/jats:italic>\n                    <\/jats:styled-content>\n                    <jats:italic>itrososphaera<\/jats:italic>\n                    (subcluster 1.1, and unassociated lineages of\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>N<\/jats:italic>\n                    <\/jats:styled-content>\n                    <jats:italic>itrososphaera<\/jats:italic>\n                    ). A displacement of ammonia\u2010oxidizing bacterial taxa was associated with management, with native groups of\n                    <jats:italic>Nitrosospira<\/jats:italic>\n                    (cluster 2 related, cluster 3A.2) displaced by\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>N<\/jats:italic>\n                    <\/jats:styled-content>\n                    <jats:italic>itrosospira<\/jats:italic>\n                    clusters 8B and 3A.1. A shift in nitrite\u2010oxidizing bacteria (\n                    <jats:styled-content style=\"fixed-case\">NOB<\/jats:styled-content>\n                    ) was correlated with management, but distribution patterns could not be linked exclusively to management. Dominant\n                    <jats:italic>nxrB<\/jats:italic>\n                    sequences displayed only distant relationships to other\n                    <jats:styled-content style=\"fixed-case\">NOB<\/jats:styled-content>\n                    isolates and environmental clones.\n                  <\/jats:p>","DOI":"10.1111\/1462-2920.13114","type":"journal-article","created":{"date-parts":[[2015,11,3]],"date-time":"2015-11-03T01:17:57Z","timestamp":1446513477000},"page":"1918-1929","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":20,"title":["Agricultural land usage transforms nitrifier population ecology"],"prefix":"10.1111","volume":"18","author":[{"given":"Anthony D.","family":"Bertagnolli","sequence":"first","affiliation":[{"name":"Department of Civil and Environmental Engineering and School of Environmental and Forest Sciences University of Washington Seattle  Seattle WA USA"},{"name":"Department of Crop and Soil 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