{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T20:40:23Z","timestamp":1790714423797,"version":"4.1.0"},"reference-count":100,"publisher":"Wiley","issue":"1","license":[{"start":{"date-parts":[[2017,11,24]],"date-time":"2017-11-24T00:00:00Z","timestamp":1511481600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100004807","name":"DFG","doi-asserted-by":"publisher","award":["EXC 1028"],"award-info":[{"award-number":["EXC 1028"]}],"id":[{"id":"10.13039\/100004807","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["enviromicro-journals.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Environmental Microbiology"],"published-print":{"date-parts":[[2018,1]]},"abstract":"<jats:title>Summary<\/jats:title>\n                  <jats:p>\n                    Although protists occupy a vast range of habitats and are known to interact with plants among other things via disease suppression, competition or growth stimulation, their contributions to the \u2018phytobiome\u2019 are not well described. To contribute to a more comprehensive picture of the plant holobiont, we examined cercozoan and oomycete taxa living in association with the model plant\n                    <jats:italic>Arabidopsis thaliana<\/jats:italic>\n                    grown in two different soils. Soil, roots, leaves and wooden toothpicks were analysed before and after surface sterilization. Cercozoa were identified using 18S rRNA gene metabarcoding, whereas the Internal Transcribed Spacer 1 was used to determine oomycetes. Subsequent analyses revealed strong spatial structuring of protist communities between compartments, although oomycetes appeared more specialized than Cercozoa. With regards to oomycetes, only members of the Peronosporales and taxa belonging to the genus\n                    <jats:italic>Globisporangium<\/jats:italic>\n                    were identified as shared members of the\n                    <jats:italic>A. thaliana<\/jats:italic>\n                    microbiome. This also applied to cercozoan taxa belonging to the Glissomonadida and Cercomonadida. We identified a strong influence by edaphic factors on the rhizosphere, but not for the phyllosphere. Distinct differences of Cercozoa found preferably in wood or fresh plant material imply specific niche adaptations. Our results highlight the importance of micro\u2010eukaryotes for the plant holobiont.\n                  <\/jats:p>","DOI":"10.1111\/1462-2920.13941","type":"journal-article","created":{"date-parts":[[2017,10,2]],"date-time":"2017-10-02T03:56:43Z","timestamp":1506916603000},"page":"30-43","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":91,"title":["Protists are an integral part of the\n                    <i>Arabidopsis thaliana<\/i>\n                    microbiome"],"prefix":"10.1111","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0817-5425","authenticated-orcid":false,"given":"Melanie","family":"Sapp","sequence":"first","affiliation":[{"name":"Institute of Population Genetics, Universit\u00e4tstrasse 1 Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University Universit\u00e4tstrasse 40225 D\u00fcsseldorf Germany"},{"name":"Institute of Zoology, Department of Terrestrial Ecology, Z\u00fclpicher Str 47b Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne Z\u00fclpicher Strasse 50674 K\u00f6ln Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sebastian","family":"Ploch","sequence":"additional","affiliation":[{"name":"Institute of Population Genetics, Universit\u00e4tstrasse 1 Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University Universit\u00e4tstrasse 40225 D\u00fcsseldorf Germany"},{"name":"Biodiversity and Climate Research Centre, Senckenberg Gesellschaft f\u00fcr Naturforschung, Senckenberganlage 25 60325 Frankfurt am Main Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6265-1907","authenticated-orcid":false,"given":"Anna M.","family":"Fiore\u2010Donno","sequence":"additional","affiliation":[{"name":"Institute of Zoology, Department of Terrestrial Ecology, Z\u00fclpicher Str 47b Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne Z\u00fclpicher Strasse 50674 K\u00f6ln Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael","family":"Bonkowski","sequence":"additional","affiliation":[{"name":"Institute of Zoology, Department of Terrestrial Ecology, Z\u00fclpicher Str 47b Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne Z\u00fclpicher Strasse 50674 K\u00f6ln Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laura E.","family":"Rose","sequence":"additional","affiliation":[{"name":"Institute of Population Genetics, Universit\u00e4tstrasse 1 Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University Universit\u00e4tstrasse 40225 D\u00fcsseldorf Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2017,11,24]]},"reference":[{"key":"e_1_2_6_2_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.1002352"},{"key":"e_1_2_6_3_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-005-0187-y"},{"key":"e_1_2_6_4_1","unstructured":"Aronesty E.(2011) ea\u2010utils: \u201cCommand\u2010line tools for processing biological sequencing data. 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