{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,3]],"date-time":"2026-06-03T23:53:23Z","timestamp":1780530803460,"version":"3.54.1"},"reference-count":67,"publisher":"Wiley","issue":"8","license":[{"start":{"date-parts":[[2020,6,14]],"date-time":"2020-06-14T00:00:00Z","timestamp":1592092800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"content-domain":{"domain":["enviromicro-journals.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Environmental Microbiology"],"published-print":{"date-parts":[[2020,8]]},"abstract":"<jats:title>Summary<\/jats:title>\n                  <jats:p>\n                    Soils in the riparian zone, the interface between terrestrial and aquatic ecosystems, may decrease anthropogenic nitrogen (N) loads to streams through microbial transformations (e.g., denitrification). However, the ecological functioning of riparian zones is often compromised due to degraded conditions (e.g., vegetation clearing). Here we compare the efficacy of an urban remnant and a cleared riparian zone for supporting a putative denitrifying microbial community using 16S rRNA sequencing and quantitative polymerase chain reaction of archaeal and bacterial nitrogen cycling genes. Although we had no direct measure of denitrification rates, we found clear patterns in the microbial communities between the sites. Greater abundance of N\u2010cycling genes was predicted by greater soil ammonium (N\u2010NH\n                    <jats:sub>4<\/jats:sub>\n                    ), organic phosphorus, and C:N. At the remnant site, we found positive correlations between microbial community composition, which was dominated by putative N oxidisers (Nitrosomonadaceae, Nitrospiraceae and Nitrosotaleaceae), and abundance of ammonia\u2010oxidizing archaea (AOA),\n                    <jats:italic>nirS<\/jats:italic>\n                    ,\n                    <jats:italic>nirK<\/jats:italic>\n                    and\n                    <jats:italic>nosZ<\/jats:italic>\n                    , whereas the cleared site had lower abundance of N\u2010oxidisers and N cycling genes. These results were especially profound for the remnant riparian fringe, which suggests that this region maintains suitable soil conditions (via diverse vegetation structure and periodic saturation) to support putative N cyclers, which could amount to higher potential for N removal.\n                  <\/jats:p>","DOI":"10.1111\/1462-2920.15092","type":"journal-article","created":{"date-parts":[[2020,5,21]],"date-time":"2020-05-21T03:10:35Z","timestamp":1590030635000},"page":"3302-3314","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":15,"title":["Soil microbes of an urban remnant riparian zone have greater potential for N removal than a degraded riparian zone"],"prefix":"10.1111","volume":"22","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6993-9804","authenticated-orcid":false,"given":"Jen A.","family":"Middleton","sequence":"first","affiliation":[{"name":"UWA School of Biological Sciences The University of Western Australia  Perth WA 6009 Australia"},{"name":"Ooid Scientific  White Gum Valley WA 6163 Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laura L.","family":"de Sosa","sequence":"additional","affiliation":[{"name":"School of Natural Sciences Bangor University  Bangor LL57 2UW UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0354-2628","authenticated-orcid":false,"given":"Belinda C.","family":"Martin","sequence":"additional","affiliation":[{"name":"UWA School of Biological Sciences The University of Western Australia  Perth WA 6009 Australia"},{"name":"Ooid Scientific  White Gum Valley WA 6163 Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Davey L.","family":"Jones","sequence":"additional","affiliation":[{"name":"School of Natural Sciences Bangor University  Bangor LL57 2UW UK"},{"name":"UWA School of Agriculture and Environment The University of Western Australia  Perth WA 6009 Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Deirdre B.","family":"Gleeson","sequence":"additional","affiliation":[{"name":"UWA School of Agriculture and Environment The University of Western Australia  Perth WA 6009 Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2020,6,14]]},"reference":[{"key":"e_1_2_6_2_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2486.2010.02340.x"},{"key":"e_1_2_6_3_1","doi-asserted-by":"publisher","DOI":"10.1002\/1099-1646(200009\/10)16:5<457::AID-RRR597>3.0.CO;2-B"},{"key":"e_1_2_6_4_1","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.00019-15"},{"key":"e_1_2_6_5_1","unstructured":"Barto\u0144 K.(2013) MuMIn: multi\u2010model inference. 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