{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,9]],"date-time":"2026-07-09T03:01:29Z","timestamp":1783566089213,"version":"3.55.0"},"reference-count":79,"publisher":"Wiley","issue":"12","license":[{"start":{"date-parts":[[2021,9,27]],"date-time":"2021-09-27T00:00:00Z","timestamp":1632700800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["21978287"],"award-info":[{"award-number":["21978287"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["2018YFD0800403"],"award-info":[{"award-number":["2018YFD0800403"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["enviromicro-journals.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Environmental Microbiology"],"published-print":{"date-parts":[[2021,12]]},"abstract":"<jats:title>Summary<\/jats:title>\n                  <jats:p>\n                    Gastrointestinal (GI) microbiota is one of the most complicated microbial ecosystems and is vital in regulating biological processes associated with nutrient absorption and homeostatic maintenance. Although several efforts have been achieved in characterizing bacterial communities across gut regions, the variation of non\u2010bacterial communities across GI tracts is still largely unexplored. To address this, we investigated microbial biogeography throughout the whole GI tracts of Ujimqin sheep (\n                    <jats:italic>Ovis aries<\/jats:italic>\n                    ) by amplicon sequencing which targeted bacteria, fungi, and archaea. The results indicated that the community structures of all three domains were significantly distinguished according to GI tracts (stomach, small intestine, and large intestine), and a more strong and efficient species interaction was detected in small intestine based on cross\u2010domain network analysis. Moreover, a between\u2010domain difference in microbial assembly mechanism of among\u2010GI regions was revealed here, wherein bacterial community is dominantly governed by variable selection (explaining ~62% of taxa turnover), while fungal and archaeal communities mainly governed by homogenizing dispersal (explaining ~49% and 60% of the turnover, respectively). Overall, these data highlight the GI section\u2010 and domain\u2010dependence of GI microbial structure and assembly mechanism, suggesting that multi\u2010domain should be explicitly considered when evaluating the influences of GI selection on gut microbial communities.\n                  <\/jats:p>","DOI":"10.1111\/1462-2920.15782","type":"journal-article","created":{"date-parts":[[2021,9,21]],"date-time":"2021-09-21T00:27:16Z","timestamp":1632184036000},"page":"7603-7616","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":20,"title":["Gut region induces gastrointestinal microbiota community shift in Ujimqin sheep (\n                    <scp>\n                      <i>Ovis aries<\/i>\n                    <\/scp>\n                    ): from a multi\u2010domain perspective"],"prefix":"10.1111","volume":"23","author":[{"given":"Jie","family":"Yang","sequence":"first","affiliation":[{"name":"College of Resources and Environment University of Chinese Academy of Sciences  Beijing China"},{"name":"Forest &amp; Nature Lab, Department of Environment, Faculty of Biosciences Engineering Ghent University  Gontrode\u2010Melle Belgium"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6080-8544","authenticated-orcid":false,"given":"Zhisheng","family":"Yu","sequence":"additional","affiliation":[{"name":"College of Resources and Environment University of Chinese Academy of Sciences  Beijing China"},{"name":"RCEES\u2010IMCAS\u2010UCAS Joint\u2010Lab of Microbial Technology for Environmental Science  Beijing China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bobo","family":"Wang","sequence":"additional","affiliation":[{"name":"College of Resources and Environment University of Chinese Academy of Sciences  Beijing China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0699-4638","authenticated-orcid":false,"given":"Fabrice","family":"Ndayisenga","sequence":"additional","affiliation":[{"name":"College of Resources and Environment University of Chinese Academy of Sciences  Beijing China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2021,9,27]]},"reference":[{"key":"e_1_2_7_2_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41396-017-0020-x"},{"key":"e_1_2_7_3_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2017.122"},{"key":"e_1_2_7_4_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature09944"},{"key":"e_1_2_7_5_1","doi-asserted-by":"publisher","DOI":"10.1609\/icwsm.v3i1.13937"},{"key":"e_1_2_7_6_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2015.253"},{"key":"e_1_2_7_7_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.03870-12"},{"key":"e_1_2_7_8_1","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.f.303"},{"key":"e_1_2_7_9_1","doi-asserted-by":"publisher","DOI":"10.7208\/chicago\/9780226101811.001.0001"},{"key":"e_1_2_7_10_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-66056-z"},{"key":"e_1_2_7_11_1","doi-asserted-by":"publisher","DOI":"10.1079\/BJN19650031"},{"key":"e_1_2_7_12_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.aad2602"},{"key":"e_1_2_7_13_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0097629"},{"key":"e_1_2_7_14_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1005963107"},{"key":"e_1_2_7_15_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2013.02.013"},{"key":"e_1_2_7_16_1","doi-asserted-by":"publisher","DOI":"10.1017\/S0007114598001445"},{"key":"e_1_2_7_17_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2014.09.043"},{"key":"e_1_2_7_18_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-13-113"},{"key":"e_1_2_7_19_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0071806"},{"key":"e_1_2_7_20_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro3552"},{"key":"e_1_2_7_21_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq461"},{"key":"e_1_2_7_22_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2832"},{"key":"e_1_2_7_23_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrgastro.2012.156"},{"key":"e_1_2_7_24_1","doi-asserted-by":"publisher","DOI":"10.3748\/wjg.v20.i43.16062"},{"key":"e_1_2_7_25_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.01263"},{"key":"e_1_2_7_26_1","doi-asserted-by":"publisher","DOI":"10.1016\/0169-5347(88)90034-1"},{"key":"e_1_2_7_27_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0066019"},{"key":"e_1_2_7_28_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41396-019-0546-1"},{"key":"e_1_2_7_29_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0810850106"},{"key":"e_1_2_7_30_1","first-page":"231","article-title":"Digestion and absorption","volume":"27","author":"Jackson A.D.","year":"2009","journal-title":"Surgery"},{"key":"e_1_2_7_31_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.soilbio.2017.12.019"},{"key":"e_1_2_7_32_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2011.9"},{"key":"e_1_2_7_33_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.02013"},{"key":"e_1_2_7_34_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq166"},{"key":"e_1_2_7_35_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0163-4453(94)91943-7"},{"key":"e_1_2_7_36_1","doi-asserted-by":"publisher","DOI":"10.1002\/jez.1786"},{"key":"e_1_2_7_37_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1002863"},{"key":"e_1_2_7_38_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmet.2015.10.001"},{"key":"e_1_2_7_39_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.aao1503"},{"key":"e_1_2_7_40_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrgastro.2016.4"},{"key":"e_1_2_7_41_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.01269"},{"key":"e_1_2_7_42_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.02125"},{"key":"e_1_2_7_43_1","doi-asserted-by":"publisher","DOI":"10.1111\/1462-2920.14265"},{"key":"e_1_2_7_44_1","volume-title":"The Theory of Island Biogeography","author":"MacArthur R.H.","year":"1967"},{"key":"e_1_2_7_45_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2020.108696"},{"key":"e_1_2_7_46_1","doi-asserted-by":"publisher","DOI":"10.1038\/srep16116"},{"key":"e_1_2_7_47_1","doi-asserted-by":"publisher","DOI":"10.1111\/1574-6941.12302"},{"key":"e_1_2_7_48_1","doi-asserted-by":"publisher","DOI":"10.1093\/dnares\/dst052"},{"key":"e_1_2_7_49_1","doi-asserted-by":"publisher","DOI":"10.1038\/nri3738"},{"key":"e_1_2_7_50_1","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.food.102308.124101"},{"key":"e_1_2_7_51_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2017.00197"},{"key":"e_1_2_7_52_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro1152"},{"key":"e_1_2_7_53_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0706375104"},{"key":"e_1_2_7_54_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41522-019-0110-9"},{"key":"e_1_2_7_55_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro.2016.141"},{"key":"e_1_2_7_56_1","doi-asserted-by":"publisher","DOI":"10.2527\/jas.2016.1222"},{"key":"e_1_2_7_57_1","doi-asserted-by":"publisher","DOI":"10.1177\/089875649601300401"},{"key":"e_1_2_7_58_1","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-food-030212-182554"},{"key":"e_1_2_7_59_1","doi-asserted-by":"publisher","DOI":"10.3390\/ijms18020330"},{"key":"e_1_2_7_60_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01541-09"},{"key":"e_1_2_7_61_1","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2011-12-6-r60"},{"key":"e_1_2_7_62_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2540"},{"key":"e_1_2_7_63_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2166"},{"key":"e_1_2_7_64_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2013.93"},{"key":"e_1_2_7_65_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2015.00370"},{"key":"e_1_2_7_66_1","doi-asserted-by":"publisher","DOI":"10.1086\/652373"},{"key":"e_1_2_7_67_1","doi-asserted-by":"publisher","DOI":"10.1111\/1462-2920.14864"},{"key":"e_1_2_7_68_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00062-07"},{"key":"e_1_2_7_69_1","article-title":"Microbial eukaryotes in the human microbiome: ecology, evolution, and future directions","volume":"2","author":"Wegener P.L.","year":"2011","journal-title":"Front Microbiol"},{"key":"e_1_2_7_70_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.1208344"},{"key":"e_1_2_7_71_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.catena.2019.104360"},{"key":"e_1_2_7_72_1","doi-asserted-by":"publisher","DOI":"10.1111\/1462-2920.13365"},{"key":"e_1_2_7_73_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-019-55940-y"},{"key":"e_1_2_7_74_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-018-21440-8"},{"key":"e_1_2_7_75_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01226-14"},{"key":"e_1_2_7_76_1","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2016.13"},{"key":"e_1_2_7_77_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.apsoil.2008.11.002"},{"key":"e_1_2_7_78_1","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.00169-10"},{"key":"e_1_2_7_79_1","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.00122-11"},{"key":"e_1_2_7_80_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-016-0831-8"}],"container-title":["Environmental Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/1462-2920.15782","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/full-xml\/10.1111\/1462-2920.15782","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/sfamjournals.onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/1462-2920.15782","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,10,30]],"date-time":"2025-10-30T23:35:25Z","timestamp":1761867325000},"score":1,"resource":{"primary":{"URL":"https:\/\/sfamjournals.onlinelibrary.wiley.com\/doi\/10.1111\/1462-2920.15782"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,9,27]]},"references-count":79,"journal-issue":{"issue":"12","published-print":{"date-parts":[[2021,12]]}},"alternative-id":["10.1111\/1462-2920.15782"],"URL":"https:\/\/doi.org\/10.1111\/1462-2920.15782","archive":["Portico"],"relation":{},"ISSN":["1462-2912","1462-2920"],"issn-type":[{"value":"1462-2912","type":"print"},{"value":"1462-2920","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,9,27]]},"assertion":[{"value":"2021-06-16","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2021-09-17","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2021-09-27","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}