{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T08:48:02Z","timestamp":1791881282063,"version":"4.3.4"},"reference-count":86,"publisher":"Wiley","issue":"10","license":[{"start":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T00:00:00Z","timestamp":1791849600000},"content-version":"vor","delay-in-days":12,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T00:00:00Z","timestamp":1790812800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"content-domain":{"domain":["enviromicro-journals.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Environmental Microbiology"],"published-print":{"date-parts":[[2026,10]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>\n                    Using shotgun metagenomics of largetooth sawfish (\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>Pristis pristis<\/jats:italic>\n                    <\/jats:styled-content>\n                    ) skin and paired pool water samples, we provide the first taxonomic and functional characterisation of a sawfish skin microbiome and assess its ecological distinctiveness, assembly, and resilience relative to the surrounding water column. The skin microbiome was strongly host\u2010associated and compositionally distinct, with lower taxonomic richness than the water column but dominated by Bacillota, particularly spore\u2010forming Bacilli. Functional profiling revealed genes associated with sporulation, dormancy, anaerobic metabolism, and peptide transport, consistent with low\u2010oxygen, low\u2010flow conditions. In contrast, water\u2010column microbiomes were more taxonomically diverse and enriched in phototrophic and polysaccharide\u2010utilisation pathways. Sawfish skin communities exhibited patterns consistent with greater functional redundancy, with gene functions accumulating more rapidly per taxon. Together with greater among\u2010individual taxonomic dispersion, this pattern is consistent with a host\u2010filtered, lottery\u2010like assembly process in which taxonomically variable communities maintain similar functional potential. The enrichment of dormancy and anaerobic pathways suggests the skin microbiome persists through periods of host quiescence and environmental stress while maintaining metabolic potential. Together, these results demonstrate that the sawfish skin supports a resilient, functionally robust microbiome distinct from ambient aquatic communities, highlighting the potential for integrating microbial functional data into conservation strategies for Critically Endangered vertebrates.\n                  <\/jats:p>","DOI":"10.1111\/1462-2920.70442","type":"journal-article","created":{"date-parts":[[2026,10,13]],"date-time":"2026-10-13T08:03:32Z","timestamp":1791878612000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Patterns of Functional Redundancy and Anaerobic Metabolic Potential Characterise the Skin Microbiome of a Critically Endangered Sawfish"],"prefix":"10.1111","volume":"28","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9820-2193","authenticated-orcid":false,"given":"Michael P.","family":"Doane","sequence":"first","affiliation":[{"name":"Flinders Accelerator for Microbiome Exploration, Flinders University  Bedford Park South Australia Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4696-1694","authenticated-orcid":false,"given":"Belinda","family":"Martin","sequence":"additional","affiliation":[{"name":"Flinders Accelerator for Microbiome Exploration, Flinders University  Bedford Park South Australia Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Emma","family":"Kerr","sequence":"additional","affiliation":[{"name":"Flinders Accelerator for Microbiome Exploration, Flinders University  Bedford Park South Australia Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2177-203X","authenticated-orcid":false,"given":"Elizabeth A.","family":"Dinsdale","sequence":"additional","affiliation":[{"name":"Flinders Accelerator for Microbiome Exploration, Flinders University  Bedford Park South Australia Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Malak Malak","family":"Rangers","sequence":"additional","affiliation":[{"name":"Malak Malak Ranger Group, Northern Land Council  Darwin Northern Territory Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Leonardo","family":"Guida","sequence":"additional","affiliation":[{"name":"Australian Marine Conservation Society  Brisbane Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4494-2625","authenticated-orcid":false,"given":"Pete M.","family":"Kyne","sequence":"additional","affiliation":[{"name":"Research Institute for the Environment and Livelihoods, Charles Darwin University  Darwin Northern Territory Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2026,10,13]]},"reference":[{"key":"e_1_2_12_2_1","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1007\/s13280-020-01318-8","article-title":"Scientists' Warning to Humanity on the Freshwater Biodiversity Crisis","volume":"50","author":"Albert J. 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H.","year":"2021","journal-title":"Nature Reviews Microbiology"},{"key":"e_1_2_12_58_1","doi-asserted-by":"crossref","first-page":"2055","DOI":"10.1111\/1365-2435.13493","article-title":"Microbial Rescue Effects: How Microbiomes Can Save Hosts From Extinction","volume":"34","author":"Mueller E. A.","year":"2020","journal-title":"Functional Ecology"},{"key":"e_1_2_12_59_1","doi-asserted-by":"crossref","first-page":"779","DOI":"10.1016\/j.tim.2021.02.005","article-title":"Evolution of Microbiota\u2013Host Associations: The Microbe's Perspective","volume":"29","author":"Obeng N.","year":"2021","journal-title":"Trends in Microbiology"},{"key":"e_1_2_12_60_1","unstructured":"Oksanen J. F. G.Blanchet M.Friendly et\u00a0al.2020.\u201cVegan: Community Ecology Package.\u201dR Packag Version 25\u20107."},{"key":"e_1_2_12_61_1","unstructured":"Oksanen J. G. L.Simpson F. 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