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Here we used Illumina short reads, Oxford Nanopore Technologies (ONT) long reads and Hi\u2010C reads to assemble the first chromosome\u2010scale genome of a female willow tree (\n                    <jats:italic>Salix dunnii<\/jats:italic>\n                    ), and to predict genes using transcriptome sequences and available databases. The final genome sequence of 328\u00a0Mb in total was assembled in 29 scaffolds, and includes 31,501 predicted genes. Analyses of short\u2010read sequence data that included female and male plants suggested a male heterogametic sex\u2010determining factor on chromosome 7, implying that, unlike the female heterogamety of most species in the genus\n                    <jats:italic>Salix<\/jats:italic>\n                    , male heterogamety evolved in the subgenus\n                    <jats:italic>Salix<\/jats:italic>\n                    . The\n                    <jats:italic>S.\u00a0dunnii<\/jats:italic>\n                    sex\u2010linked region occupies about 3.21\u00a0Mb of chromosome 7 in females (representing its position in the X chromosome), probably within a pericentromeric region. Our data suggest that this region is enriched for transposable element insertions, and about one\u2010third of its 124 protein\u2010coding genes were gained via duplications from other genome regions. We detect purifying selection on the genes that were ancestrally present in the region, though some have been lost. Transcriptome data from female and male individuals show more male\u2010 than female\u2010biased genes in catkin and leaf tissues, and indicate enrichment for male\u2010biased genes in the pseudo\u2010autosomal regions. Our study provides valuable genomic resources for further studies of sex\u2010determining regions in the family Salicaceae, and sex chromosome evolution.\n                  <\/jats:p>","DOI":"10.1111\/1755-0998.13362","type":"journal-article","created":{"date-parts":[[2021,2,20]],"date-time":"2021-02-20T09:52:43Z","timestamp":1613814763000},"page":"1966-1982","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":55,"title":["Chromosome\u2010scale assembly of the genome of\n                    <i>Salix<\/i>\n                    <i>dunnii<\/i>\n                    reveals a male\u2010heterogametic sex determination system on chromosome 7"],"prefix":"10.1111","volume":"21","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4591-8056","authenticated-orcid":false,"given":"Li","family":"He","sequence":"first","affiliation":[{"name":"Beijing Advanced Innovation Center for Tree Breeding by Molecular Design National Engineering Laboratory for Tree Breeding Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants Ministry of Education College of Biological Sciences and Technology Beijing Forestry University Beijing China"},{"name":"College of Forestry Fujian Agriculture and Forestry University Fuzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kai\u2010Hua","family":"Jia","sequence":"additional","affiliation":[{"name":"Beijing Advanced Innovation Center for Tree Breeding by Molecular Design National Engineering Laboratory for Tree Breeding Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants Ministry of Education College of Biological Sciences and Technology Beijing Forestry University Beijing China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ren\u2010Gang","family":"Zhang","sequence":"additional","affiliation":[{"name":"Ori (Shandong) Gene Science and Technology Co., Ltd Weifang 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Ornamental Plants Ministry of Education College of Biological Sciences and Technology Beijing Forestry University Beijing China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Si\u2010Wen","family":"Zeng","sequence":"additional","affiliation":[{"name":"College of Forestry Fujian Agriculture and Forestry University Fuzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xin\u2010Jie","family":"Cai","sequence":"additional","affiliation":[{"name":"College of Forestry Fujian Agriculture and Forestry University Fuzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6623-7623","authenticated-orcid":false,"given":"Natascha Dorothea","family":"Wagner","sequence":"additional","affiliation":[{"name":"Department of Systematics, Biodiversity and Evolution of Plants (with Herbarium) University of Goettingen G\u00f6ttingen 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