{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,30]],"date-time":"2026-04-30T02:55:55Z","timestamp":1777517755004,"version":"3.51.4"},"reference-count":16,"publisher":"Wiley","issue":"5","license":[{"start":{"date-parts":[[2018,7,5]],"date-time":"2018-07-05T00:00:00Z","timestamp":1530748800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"funder":[{"DOI":"10.13039\/501100004731","name":"Natural Science Foundation of Zhejiang Province","doi-asserted-by":"publisher","award":["LY16D060002"],"award-info":[{"award-number":["LY16D060002"]}],"id":[{"id":"10.13039\/501100004731","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Animal Genetics"],"published-print":{"date-parts":[[2018,10]]},"abstract":"<jats:title>Summary<\/jats:title><jats:p>The large yellow croaker, <jats:italic>Larimichthys crocea<\/jats:italic>, is a commercially important drum fish (Family: Sciaenidae) native to the East and South China Sea. Habitat deterioration and overfishing have led to significant population decline and the collapse of its fishery over the past decades. Today, the market supply of <jats:italic>L.\u00a0crocea<\/jats:italic> depends solely on stocks produced in hatcheries and farms. Common issues that occur in the culture of <jats:italic>L.\u00a0crocea<\/jats:italic> include germplasm degradation, precocious puberty, elevated disease susceptibility and growth retardation. In this study, we employed <jats:styled-content style=\"fixed-case\">SLAF<\/jats:styled-content>\u2010seq (specific\u2010locus amplified fragment sequencing) technology to identify single nucleotide polymorphism (<jats:styled-content style=\"fixed-case\">SNP<\/jats:styled-content>) loci across the <jats:italic>L.\u00a0crocea<\/jats:italic> genome. Sixty samples were selected for <jats:styled-content style=\"fixed-case\">SLAF<\/jats:styled-content> analysis out of 1000 progeny in the same cohort of a cultured stock. Our analysis obtained a total of 151\u00a0253 <jats:styled-content style=\"fixed-case\">SLAF<\/jats:styled-content>s, of which 65.88% (99\u00a0652) were identified to be polymorphic, scoring a total of 710\u00a0567 putative <jats:styled-content style=\"fixed-case\">SNP<\/jats:styled-content>s. Further filtration resulted in a final panel of 1782 <jats:styled-content style=\"fixed-case\">SNP<\/jats:styled-content> loci. The data derived from this work could be beneficial for understanding the genetics of complex phenotypic traits as well as for developing marker\u2010selection\u2010assisted breeding programs in <jats:italic>L.\u00a0crocea<\/jats:italic>.<\/jats:p>","DOI":"10.1111\/age.12676","type":"journal-article","created":{"date-parts":[[2018,7,5]],"date-time":"2018-07-05T10:44:37Z","timestamp":1530787477000},"page":"472-474","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Identification of a large <scp>SNP<\/scp> dataset in <i>Larimichthys crocea<\/i> using specific\u2010locus amplified fragment sequencing"],"prefix":"10.1111","volume":"49","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1591-3190","authenticated-orcid":false,"given":"Y.","family":"Chen","sequence":"first","affiliation":[{"name":"College of Marine Science and Technology Zhejiang Ocean University Changzhi Island Zhoushan Zhejiang 316022 China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Y.","family":"Wang","sequence":"additional","affiliation":[{"name":"College of Marine Science and Technology Zhejiang Ocean University Changzhi Island Zhoushan Zhejiang 316022 China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.","family":"Jiang","sequence":"additional","affiliation":[{"name":"College of Marine Science and Technology Zhejiang Ocean University Changzhi Island Zhoushan Zhejiang 316022 China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J.","family":"Zhang","sequence":"additional","affiliation":[{"name":"College of Marine Science and Technology Zhejiang Ocean University Changzhi Island Zhoushan Zhejiang 316022 China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Z.","family":"L\u00fc","sequence":"additional","affiliation":[{"name":"College of Marine Science and Technology Zhejiang Ocean University Changzhi Island Zhoushan Zhejiang 316022 China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.","family":"Deng","sequence":"additional","affiliation":[{"name":"College of Food and Pharmacy Zhejiang Ocean University Changzhi Island Zhoushan Zhejiang 316022 China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2018,7,5]]},"reference":[{"key":"e_1_2_4_2_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1005118"},{"key":"e_1_2_4_3_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0106713"},{"key":"e_1_2_4_4_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr330"},{"key":"e_1_2_4_5_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0044-8486(03)00511-8"},{"key":"e_1_2_4_6_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-13-244"},{"key":"e_1_2_4_7_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01043-13"},{"key":"e_1_2_4_8_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp324"},{"key":"e_1_2_4_9_1","volume-title":"Culture and Biology of Large Yellow Croaker","author":"Liu J.F.","year":"2013"},{"key":"e_1_2_4_10_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1467-2979.2008.00278.x"},{"key":"e_1_2_4_11_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0037135"},{"key":"e_1_2_4_12_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0058700"},{"key":"e_1_2_4_13_1","doi-asserted-by":"crossref","first-page":"10.1","DOI":"10.1002\/0471250953.bi1110s43","article-title":"From fastq data to high\u2010confidence variant calls: the genome analysis toolkit best practices pipeline","volume":"43","author":"Van der Auwera G.A.","year":"2013","journal-title":"Current Protocols in Bioinformatics"},{"key":"e_1_2_4_14_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr346"},{"key":"e_1_2_4_15_1","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms6227"},{"key":"e_1_2_4_16_1","doi-asserted-by":"publisher","DOI":"10.1007\/s10126-014-9590-z"},{"key":"e_1_2_4_17_1","doi-asserted-by":"publisher","DOI":"10.1139\/f96-265"}],"container-title":["Animal Genetics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1111%2Fage.12676","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/age.12676","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,16]],"date-time":"2023-09-16T14:01:28Z","timestamp":1694872888000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/age.12676"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,7,5]]},"references-count":16,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2018,10]]}},"alternative-id":["10.1111\/age.12676"],"URL":"https:\/\/doi.org\/10.1111\/age.12676","archive":["Portico"],"relation":{},"ISSN":["0268-9146","1365-2052"],"issn-type":[{"value":"0268-9146","type":"print"},{"value":"1365-2052","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,7,5]]},"assertion":[{"value":"2018-04-06","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2018-07-05","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}