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This variation has been explored as one of the selection targets to form breeding features in the pig industry. In this study, a customized Affymetrix Axiom Pig1.4M array plate was used to conduct genome\u2010wide association studies (GWAS<\/jats:styled-content>) for two exterior traits\u2014spotted coat color (SC<\/jats:styled-content>) and facial type (FT<\/jats:styled-content>)\u2014in Chinese Dongxiang spotted pigs. Two and 12 single nucleotide polymorphisms (SNP<\/jats:styled-content>s) were identified to be associated with SC<\/jats:styled-content> and FT<\/jats:styled-content> at the 5% genome\u2010wide significant level, respectively. Of these SNP<\/jats:styled-content>s, two associated with SC<\/jats:styled-content> were located around the DACH<\/jats:styled-content>1<\/jats:italic> gene on Sus Scrofa<\/jats:italic> chromosome (SSC<\/jats:styled-content>)11. Eleven SNP<\/jats:styled-content>s associated with FT<\/jats:styled-content> were located within a 7.68\u00a0Mb region (29.03\u201336.71\u00a0Mb) on SSC<\/jats:styled-content>7. Based on the GWAS<\/jats:styled-content> results and the biological functions of genes, we highlight EDNRB<\/jats:styled-content><\/jats:italic> as a candidate gene for SC<\/jats:styled-content> and HMGA<\/jats:styled-content>1<\/jats:italic> and RPS<\/jats:styled-content>10<\/jats:italic> as the potential genes affecting facial variation. The findings contribute to the final characterization of causative genes and mutations underlying the effects of the SSC<\/jats:styled-content>7 and SSC<\/jats:styled-content>11 loci and improve our understanding of the genetic basis of phenotypic variation in Chinese indigenous pigs.<\/jats:p>","DOI":"10.1111\/asj.13003","type":"journal-article","created":{"date-parts":[[2018,3,30]],"date-time":"2018-03-30T23:43:16Z","timestamp":1522453396000},"page":"868-875","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":10,"title":["Genome\u2010wide association studies for two exterior traits in Chinese Dongxiang spotted pigs"],"prefix":"10.1111","volume":"89","author":[{"given":"Chengbin","family":"Wang","sequence":"first","affiliation":[{"name":"State Key Laboratory of Pig Genetic Improvement and Production Technology Jiangxi Agricultural University Nanchang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaopeng","family":"Wang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Pig Genetic Improvement and Production Technology Jiangxi Agricultural University Nanchang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jianhong","family":"Tang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Pig Genetic Improvement and Production Technology Jiangxi Agricultural University Nanchang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hao","family":"Chen","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Pig Genetic Improvement and Production Technology Jiangxi Agricultural University Nanchang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Junjie","family":"Zhang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Pig Genetic Improvement and Production Technology Jiangxi Agricultural University Nanchang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yiping","family":"Li","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Pig Genetic Improvement and Production Technology Jiangxi Agricultural University Nanchang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shengrong","family":"Lei","sequence":"additional","affiliation":[{"name":"National Conservation Farm of Dongxiang Spotted Pigs Dongxiang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Huayuan","family":"Ji","sequence":"additional","affiliation":[{"name":"Institute of Animal Husbandry and Veterinary Jiangxi Academy of Agricultural Science Nanchang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bin","family":"Yang","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Pig Genetic Improvement and Production Technology Jiangxi Agricultural University Nanchang 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