{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T08:10:08Z","timestamp":1790151008253,"version":"4.0.1"},"reference-count":69,"publisher":"Wiley","license":[{"start":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T00:00:00Z","timestamp":1790121600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"},{"start":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T00:00:00Z","timestamp":1790121600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"funder":[{"DOI":"10.13039\/100010002","name":"Ministry of Education","doi-asserted-by":"publisher","award":["RS\u20102023\u201000243296"],"award-info":[{"award-number":["RS\u20102023\u201000243296"]}],"id":[{"id":"10.13039\/100010002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100011705","name":"Korea Institute of Marine Science and Technology promotion","doi-asserted-by":"publisher","award":["RS\u20102025\u201002215227"],"award-info":[{"award-number":["RS\u20102025\u201002215227"]}],"id":[{"id":"10.13039\/501100011705","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100011705","name":"Korea Institute of Marine Science and Technology promotion","doi-asserted-by":"publisher","award":["RS\u20102026\u201025543836"],"award-info":[{"award-number":["RS\u20102026\u201025543836"]}],"id":[{"id":"10.13039\/501100011705","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100011705","name":"Korea Institute of Marine Science and Technology promotion","doi-asserted-by":"publisher","award":["RS\u20102026\u201025525656"],"award-info":[{"award-number":["RS\u20102026\u201025525656"]}],"id":[{"id":"10.13039\/501100011705","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Cladistics"],"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Recent advances in bioinformatics have significantly expanded our understanding of the genetic properties of organisms and have provided valuable insights into their phylogenetic relationships and evolutionary histories. However, molecular phylogenetic studies of the class Copepoda remain limited, and the focus has been mainly on the major taxa, namely Calanoida, Cyclopoida, Harpacticoida and Siphonostomatoida. Consequently, a comprehensive phylogeny encompassing diverse copepod groups has yet to be established. In this study, we reconstructed the phylogeny of Copepoda using amino acid sequences of 40 orthologous genes, with particular emphasis on the previously understudied order Platycopioida. Our primary objectives were to confirm the generally recognized ancestral position of Platycopioida and to investigate subsequent phylogenetic changes in light of previous studies while incorporating additional copepod taxa. Our phylogenomic and statistical analyses revealed that Platycopioida represents the most basal lineage of Copepoda, which is consistent with previous morphological studies. In addition, we investigated the minor topological changes observed within the Podoplea clade, particularly in relation to the inclusion of additional copepod taxa and the use of more genetic information to improve the accuracy of phylogenetic inference.<\/jats:p>","DOI":"10.1111\/cla.70069","type":"journal-article","created":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T07:38:16Z","timestamp":1790149096000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["First genomic analysis of Platycopioida and phylogenomics across six copepod orders"],"prefix":"10.1111","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8017-8313","authenticated-orcid":false,"given":"Donggu","family":"Jeon","sequence":"first","affiliation":[{"name":"Department of Life Science Chung\u2010Ang University  Seoul Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9479-9818","authenticated-orcid":false,"given":"Chi\u2010une","family":"Song","sequence":"additional","affiliation":[{"name":"Department of Life Science Chung\u2010Ang University  Seoul Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Junil","family":"Ko","sequence":"additional","affiliation":[{"name":"Department of Life Science Chung\u2010Ang University  Seoul Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yusuke","family":"Kondo","sequence":"additional","affiliation":[{"name":"Setouchi Carbon Neutral Research Center Hiroshima University  Hiroshima Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kenji","family":"Toyota","sequence":"additional","affiliation":[{"name":"Department of Bioresource Science Hiroshima University  Hiroshima Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Man\u2010Ki","family":"Jeong","sequence":"additional","affiliation":[{"name":"Department of Smart Fisheries Resources Management Chonnam National University  Yeosu Korea"},{"name":"ICT Fishery Resource Management Research Institute Chonnam National University  Yeosu Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ho Young","family":"Soh","sequence":"additional","affiliation":[{"name":"Department of Ocean Integrated Science Chonnam National University  Yeosu Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6018-7442","authenticated-orcid":false,"given":"Susumu","family":"Ohtsuka","sequence":"additional","affiliation":[{"name":"Setouchi Carbon Neutral Research Center Hiroshima University  Hiroshima Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4687-1066","authenticated-orcid":false,"given":"Seong\u2010il","family":"Eyun","sequence":"additional","affiliation":[{"name":"Department of Life Science Chung\u2010Ang University  Seoul Korea"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2026,9,23]]},"reference":[{"key":"e_1_2_9_2_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00343-014-4385-7"},{"key":"e_1_2_9_3_1","doi-asserted-by":"publisher","DOI":"10.1023\/A:1003020829836"},{"key":"e_1_2_9_4_1","doi-asserted-by":"publisher","DOI":"10.1007\/s10750-009-9797-6"},{"key":"e_1_2_9_5_1","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.12034"},{"key":"e_1_2_9_6_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msad175"},{"key":"e_1_2_9_7_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ympev.2025.108311"},{"key":"e_1_2_9_8_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ympev.2011.01.008"},{"key":"e_1_2_9_9_1","volume-title":"An introduction to copepod diversity","author":"Boxshall G.","year":"2004"},{"key":"e_1_2_9_10_1","doi-asserted-by":"publisher","DOI":"10.11646\/zootaxa.4229.1.1"},{"key":"e_1_2_9_11_1","doi-asserted-by":"publisher","DOI":"10.1007\/s002270050445"},{"key":"e_1_2_9_12_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp348"},{"key":"e_1_2_9_13_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty560"},{"key":"e_1_2_9_14_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2024.136627"},{"key":"e_1_2_9_15_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12862-017-0883-5"},{"key":"e_1_2_9_16_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msx147"},{"key":"e_1_2_9_17_1","doi-asserted-by":"publisher","DOI":"10.1080\/00364827.1972.10411199"},{"key":"e_1_2_9_18_1","doi-asserted-by":"publisher","DOI":"10.1080\/00364827.1985.10419688"},{"key":"e_1_2_9_19_1","doi-asserted-by":"publisher","DOI":"10.1007\/BF00026325"},{"key":"e_1_2_9_20_1","first-page":"239","article-title":"Taxon sampling and the accuracy of phylogenetic analyses","volume":"46","author":"Heath T.","year":"2008","journal-title":"J. Syst. Evol."},{"key":"e_1_2_9_21_1","doi-asserted-by":"publisher","DOI":"10.2307\/1548343"},{"key":"e_1_2_9_22_1","doi-asserted-by":"publisher","DOI":"10.1007\/BF00229920"},{"key":"e_1_2_9_23_1","doi-asserted-by":"publisher","DOI":"10.1651\/C-2391"},{"key":"e_1_2_9_24_1","volume-title":"Copepod evolution","author":"Huys R.","year":"1991"},{"key":"e_1_2_9_25_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1095-8312.2005.00579.x"},{"key":"e_1_2_9_26_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ympev.2007.02.004"},{"key":"e_1_2_9_27_1","doi-asserted-by":"publisher","DOI":"10.1080\/23802359.2019.1601042"},{"key":"e_1_2_9_28_1","doi-asserted-by":"publisher","DOI":"10.1093\/jcbiol\/rux095"},{"key":"e_1_2_9_29_1","doi-asserted-by":"publisher","DOI":"10.26508\/lsa.202201744"},{"key":"e_1_2_9_30_1","first-page":"350","article-title":"An integrated phylogenomic approach for potential host\u2010associated evolution of monstrilloid copepods","volume":"62","author":"Jeon D.","year":"2024","journal-title":"Oceanogr. Mar. Biol."},{"key":"e_1_2_9_31_1","doi-asserted-by":"publisher","DOI":"10.1023\/A:1013113327674"},{"key":"e_1_2_9_32_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1008325"},{"key":"e_1_2_9_33_1","volume-title":"Parasitic Copepoda of British fishes","author":"Kabata Z.","year":"1979"},{"key":"e_1_2_9_34_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/mst010"},{"key":"e_1_2_9_35_1","doi-asserted-by":"publisher","DOI":"10.1093\/plankt\/fbn100"},{"key":"e_1_2_9_36_1","doi-asserted-by":"publisher","DOI":"10.1007\/BF02100115"},{"key":"e_1_2_9_37_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz305"},{"key":"e_1_2_9_38_1","doi-asserted-by":"publisher","DOI":"10.1111\/zsc.12183"},{"key":"e_1_2_9_39_1","first-page":"1","article-title":"Copepoda \u2018Notodelphyoida\u2019 from the Swedish west\u2010coast with an outline on the systematics of the copepods","volume":"40","author":"Lang K.","year":"1948","journal-title":"Ark. Zool."},{"key":"e_1_2_9_40_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msh112"},{"key":"e_1_2_9_41_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2148-7-S1-S4"},{"key":"e_1_2_9_42_1","doi-asserted-by":"publisher","DOI":"10.1093\/gbe\/evz097"},{"key":"e_1_2_9_43_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0010278"},{"key":"e_1_2_9_44_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msab199"},{"key":"e_1_2_9_45_1","doi-asserted-by":"publisher","DOI":"10.15298\/arthsel.30.1.04"},{"key":"e_1_2_9_46_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msaa015"},{"key":"e_1_2_9_47_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-12-73"},{"key":"e_1_2_9_48_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/mss216"},{"key":"e_1_2_9_49_1","doi-asserted-by":"publisher","DOI":"10.2307\/1549062"},{"key":"e_1_2_9_50_1","doi-asserted-by":"publisher","DOI":"10.2108\/zsj.15.415"},{"key":"e_1_2_9_51_1","doi-asserted-by":"publisher","DOI":"10.1002\/cpbi.102"},{"key":"e_1_2_9_52_1","doi-asserted-by":"publisher","DOI":"10.1080\/106351598260680"},{"key":"e_1_2_9_53_1","first-page":"594","article-title":"Some usually overlooked cryptic copepod habitats","volume":"58","author":"Reid J.W.","year":"1986","journal-title":"Syllogeous"},{"key":"e_1_2_9_54_1","doi-asserted-by":"publisher","DOI":"10.1093\/sysbio\/sys029"},{"key":"e_1_2_9_55_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.191248498"},{"key":"e_1_2_9_56_1","doi-asserted-by":"publisher","DOI":"10.1080\/10635150390132894"},{"key":"e_1_2_9_57_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cub.2017.05.040"},{"key":"e_1_2_9_58_1","doi-asserted-by":"publisher","DOI":"10.1098\/rspb.2018.1524"},{"key":"e_1_2_9_59_1","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms1049"},{"key":"e_1_2_9_60_1","doi-asserted-by":"publisher","DOI":"10.1080\/10635150290069913"},{"key":"e_1_2_9_61_1","doi-asserted-by":"publisher","DOI":"10.1093\/oxfordjournals.molbev.a026201"},{"key":"e_1_2_9_62_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1096-0031.1999.tb00391.x"},{"key":"e_1_2_9_63_1","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.21176"},{"key":"e_1_2_9_64_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/mss009"},{"key":"e_1_2_9_65_1","doi-asserted-by":"publisher","DOI":"10.1086\/BBLv226n1p69"},{"key":"e_1_2_9_66_1","unstructured":"Walter T.C.andBoxshall G. 2024.World of Copepods database. Available at:http:\/\/www.marinespecies.org\/copepoda(accessed December 11 2024)."},{"key":"e_1_2_9_67_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0042925"},{"key":"e_1_2_9_68_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00239-012-9508-1"},{"key":"e_1_2_9_69_1","first-page":"95","article-title":"The hadal community, an introduction","volume":"6","author":"Wolff T.","year":"1959","journal-title":"Deep\u2010Sea Res."},{"key":"e_1_2_9_70_1","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1891-0"}],"container-title":["Cladistics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/cla.70069","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/full-xml\/10.1111\/cla.70069","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/cla.70069","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T07:38:20Z","timestamp":1790149100000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/cla.70069"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,23]]},"references-count":69,"alternative-id":["10.1111\/cla.70069"],"URL":"https:\/\/doi.org\/10.1111\/cla.70069","archive":["Portico"],"relation":{},"ISSN":["0748-3007","1096-0031"],"issn-type":[{"value":"0748-3007","type":"print"},{"value":"1096-0031","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,23]]},"assertion":[{"value":"2025-06-02","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2026-09-04","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2026-09-23","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"cla.70069"}}