{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,24]],"date-time":"2026-10-24T08:37:27Z","timestamp":1792831047512,"version":"4.5.0"},"reference-count":119,"publisher":"Wiley","license":[{"start":{"date-parts":[[2026,10,24]],"date-time":"2026-10-24T00:00:00Z","timestamp":1792800000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"},{"start":{"date-parts":[[2026,10,24]],"date-time":"2026-10-24T00:00:00Z","timestamp":1792800000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Cladistics"],"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    Coniferous forests are among the ecosystems most exposed to rapid climate warming, and a well\u2010resolved phylogeny of\n                    <jats:italic>Picea<\/jats:italic>\n                    is essential for understanding the evolutionary processes that have shaped diversification and regional differentiation across the genus. Here, we analysed pan\u2010transcriptomes spanning 37\n                    <jats:italic>Picea<\/jats:italic>\n                    species from across Northern Hemisphere forests. Our analyses reveal a bipartite pan\u2010transcriptomic architecture in which core genes (9.4%) are associated primarily with fundamental cellular functions, whereas dispensable and private components (90.6% combined) are more strongly associated with ecological differentiation. Species trees inferred from low\u2010copy orthologues resolve four major clades, and approximately 275 loci are sufficient to recover a stable backbone topology. Coalescent analyses indicate pervasive genealogical discordance, with incomplete lineage sorting (ILS) showing the greatest relative importance (27.75%) and gene\u2010flow signals contributing less (7.27%). The most variable gene families (7.4%) further delimit three biogeographically structured regional groups: Qinghai\u2013Tibet Plateau lineages are characterized by genes involved in environmental stress, signalling and low\u2010oxygen responses; East Asian lineages show greater representation of protein metabolism and ubiquitin\u2010mediated regulation; and Holarctic lineages are characterized by photosynthesis, chloroplast function, cell\u2010wall processes and secondary metabolism. Together, these findings link regional gene\u2010family differentiation with the persistence of ancestral polymorphism and provide a phylogenomic framework for understanding spruce diversification and for developing hypotheses relevant to climate\u2010resilient forest conservation.\n                  <\/jats:p>","DOI":"10.1111\/cla.70077","type":"journal-article","created":{"date-parts":[[2026,10,24]],"date-time":"2026-10-24T07:54:12Z","timestamp":1792828452000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["<i>Picea<\/i>\n                    pan\u2010transcriptomes reveal signatures of complex phylogenetic conflict and adaptation"],"prefix":"10.1111","author":[{"given":"Zhaorui","family":"Fan","sequence":"first","affiliation":[{"name":"State Key Laboratory of Herbage Improvement and Grassland Agro\u2010Ecosystem, College of Ecology Lanzhou University  Lanzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lian","family":"Liu","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Herbage Improvement and Grassland Agro\u2010Ecosystem, College of Ecology Lanzhou University  Lanzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Liru","family":"Ma","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Herbage Improvement and Grassland Agro\u2010Ecosystem, College of Ecology Lanzhou University  Lanzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qing","family":"Lai","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Herbage Improvement and Grassland Agro\u2010Ecosystem, College of Ecology Lanzhou University  Lanzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chaoran","family":"Weng","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Herbage Improvement and Grassland Agro\u2010Ecosystem, College of Ecology Lanzhou University  Lanzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shengming","family":"Lu","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Herbage Improvement and Grassland Agro\u2010Ecosystem, College of Ecology Lanzhou University  Lanzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hui","family":"Zhu","sequence":"additional","affiliation":[{"name":"Laboratory of Tropical Plant Resources and Sustainable Use, Yunnan Key Laboratory of Crop Wild Relatives Omics, Xishuangbanna Tropical Botanical Garden Chinese Academy of Sciences  Mengla Yunnan China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiahui","family":"Chen","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Herbage Improvement and Grassland Agro\u2010Ecosystem, College of Ecology Lanzhou University  Lanzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6926-8406","authenticated-orcid":false,"given":"Yongshuai","family":"Sun","sequence":"additional","affiliation":[{"name":"Laboratory of Tropical Plant Resources and Sustainable Use, Yunnan Key Laboratory of Crop Wild Relatives Omics, Xishuangbanna Tropical Botanical Garden Chinese Academy of Sciences  Mengla Yunnan China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8579-8696","authenticated-orcid":false,"given":"Dafu","family":"Ru","sequence":"additional","affiliation":[{"name":"State Key Laboratory of Herbage Improvement and Grassland Agro\u2010Ecosystem, College of Ecology Lanzhou University  Lanzhou China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2026,10,24]]},"reference":[{"key":"e_1_2_8_2_1","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1111\/j.1752-4571.2007.00013.x","article-title":"Adaptation, migration or extirpation: climate change outcomes for tree populations","volume":"1","author":"Aitken S.N.","year":"2008","journal-title":"Evol. 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