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Today, Utah prairie dogs exist in small, isolated populations, making them less demographically stable and more susceptible to erosion of genetic variation by genetic drift. We characterized patterns of genetic structure at neutral and putatively adaptive loci in order to evaluate the relative effects of genetic drift and local adaptation on population divergence. We sampled individuals across the Utah prairie dog species range and generated 2955 single nucleotide polymorphisms using double digest restriction site\u2010associated DNA sequencing. Genetic diversity was lower in low\u2010elevation sites compared to high\u2010elevation sites. Population divergence was high among sites and followed an isolation\u2010by\u2010distance model. Our results indicate that genetic drift plays a substantial role in the population divergence of the Utah prairie dog, and colonies would likely benefit from translocation of individuals between recovery units, which are characterized by distinct elevations, despite the detection of environmental associations with outlier loci. By understanding the processes that shape genetic structure, better informed decisions can be made with respect to the management of threatened species to ensure that adaptation is not stymied.<\/jats:p>","DOI":"10.1111\/eva.13179","type":"journal-article","created":{"date-parts":[[2020,11,29]],"date-time":"2020-11-29T11:55:40Z","timestamp":1606650940000},"page":"1036-1051","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["Characterizing patterns of genomic variation in the threatened Utah prairie dog: Implications for conservation and management"],"prefix":"10.1111","volume":"14","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4183-3546","authenticated-orcid":false,"given":"Rachael M.","family":"Giglio","sequence":"first","affiliation":[{"name":"Department of Biological Sciences University of Wisconsin\u2010Milwaukee Milwaukee WI USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3933-1563","authenticated-orcid":false,"given":"Tonie E.","family":"Rocke","sequence":"additional","affiliation":[{"name":"USGS National Wildlife Health Center Madison WI USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jorge E.","family":"Osorio","sequence":"additional","affiliation":[{"name":"Department of Pathobiological Sciences School of Veterinary Medicine University of Wisconsin\u2010Madison Madison WI USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9892-1056","authenticated-orcid":false,"given":"Emily K.","family":"Latch","sequence":"additional","affiliation":[{"name":"Department of Biological Sciences University of Wisconsin\u2010Milwaukee Milwaukee WI USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2020,12,21]]},"reference":[{"key":"e_1_2_9_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tpb.2014.02.003"},{"key":"e_1_2_9_3_1","doi-asserted-by":"publisher","DOI":"10.1007\/s10980\u2010005\u20105220\u20105"},{"key":"e_1_2_9_4_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tree.2013.08.005"},{"key":"e_1_2_9_5_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tree.2007.09.008"},{"key":"e_1_2_9_6_1","doi-asserted-by":"publisher","DOI":"10.1038\/hdy.1986.63"},{"key":"e_1_2_9_7_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.biocon.2014.03.008"},{"key":"e_1_2_9_8_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.2517\u20106161.1995.tb02031.x"},{"key":"e_1_2_9_9_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0154488"},{"key":"e_1_2_9_10_1","doi-asserted-by":"publisher","DOI":"10.1111\/ele.12150"},{"key":"e_1_2_9_11_1","doi-asserted-by":"publisher","DOI":"10.1007\/s10393\u2010018\u20101334\u20105"},{"key":"e_1_2_9_12_1","doi-asserted-by":"publisher","DOI":"10.1002\/ece3.1874"},{"key":"e_1_2_9_13_1","doi-asserted-by":"publisher","DOI":"10.1111\/1755\u20100998.12906"},{"key":"e_1_2_9_14_1","doi-asserted-by":"publisher","DOI":"10.1534\/g3.111.000240"},{"key":"e_1_2_9_15_1","doi-asserted-by":"publisher","DOI":"10.1111\/mec.12354"},{"key":"e_1_2_9_16_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrg2526"},{"key":"e_1_2_9_17_1","first-page":"83","article-title":"The Utah prairie dog \u2013 Decline of a legend","volume":"34","author":"Collier G. 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