{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,18]],"date-time":"2026-08-18T00:49:37Z","timestamp":1787014177462,"version":"build-2736575974"},"reference-count":78,"publisher":"Wiley","issue":"2","license":[{"start":{"date-parts":[[2022,1,22]],"date-time":"2022-01-22T00:00:00Z","timestamp":1642809600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100003524","name":"Ministry of Business, Innovation and Employment","doi-asserted-by":"publisher","award":["C11X1603"],"award-info":[{"award-number":["C11X1603"]}],"id":[{"id":"10.13039\/501100003524","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Evolutionary Applications"],"published-print":{"date-parts":[[2022,2]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    Ectotherm species, such as marine fishes, depend on environmental temperature to regulate their vital functions. In finfish aquaculture production, being able to predict physiological responses in growth and other economic traits to temperature is crucial to address challenges inherent in the selection of grow\u2010out locations. This will become an even more significant issue under the various predicted future climate change scenarios. In this study, we used the marine teleost silver trevally (\n                    <jats:italic>Pseudocaranx georgianus<\/jats:italic>\n                    ), a species currently being explored as a candidate for aquaculture in New Zealand, as a model to study plasticity in gene expression patterns and growth in response to different temperatures. Using a captive study population, temperature conditions were experimentally manipulated for 1\u00a0month to mimic seasonal extremes. Phenotypic differences in growth were measured in 400 individuals, and gene expression patterns of pituitary gland and liver were determined in a subset of 100 individuals. Results showed that growth increased 50% in the warmer compared with the colder condition, suggesting that temperature has a large impact on metabolic activities associated with growth. A total of 265,116,678\u00a0single\u2010end RNA sequence reads were aligned to the trevally genome, and 28,416 transcript models were developed (27,887 of these had GenBank accessions, and 17,980 unique gene symbols). Further filtering reduced this set to 8597\u00a0gene models. 39 and 238 differentially expressed genes (DEGs) were found in the pituitary gland and the liver, respectively (|log\n                    <jats:sub>2<\/jats:sub>\n                    FC|\u00a0&gt;\u00a00.26,\n                    <jats:italic>p<\/jats:italic>\n                    \u2010value\u00a0&lt;\u00a00.05). Of these, 6 DEGs showed a common expression pattern between both tissues, all involved in housekeeping functions. Temperature\u2010modulated growth responses were linked to major pathways affecting metabolism, cell regulation and signalling, previously shown to be important for temperature tolerance in other fish species. An interesting finding of this study was that genes linked to the reproductive system were up\u2010regulated in both tissues in the high treatment, indicating the onset of sexual maturation. Few studies have investigated the thermal plasticity of the gene expression in the main organs of the somatotropic axis simultaneously. Our findings indicate that trevally exhibit substantial growth differences and predictable plastic regulatory responses to different temperature conditions. We identified a set of genes that provide a list of candidates for further investigations for selective breeding objectives and how populations may adapt to increasing temperatures.\n                  <\/jats:p>","DOI":"10.1111\/eva.13332","type":"journal-article","created":{"date-parts":[[2021,12,8]],"date-time":"2021-12-08T01:42:09Z","timestamp":1638927729000},"page":"237-248","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":9,"title":["Differential expression analyses reveal extensive transcriptional plasticity induced by temperature in New Zealand silver trevally (\n                    <i>Pseudocaranx georgianus<\/i>\n                    )"],"prefix":"10.1111","volume":"15","author":[{"given":"Noemie","family":"Valenza\u2010Troubat","sequence":"first","affiliation":[{"name":"The New Zealand Institute for Plant and Food Research Limited Nelson New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marcus","family":"Davy","sequence":"additional","affiliation":[{"name":"The New Zealand Institute for Plant and Food Research Limited Te Puke New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Roy","family":"Storey","sequence":"additional","affiliation":[{"name":"The New Zealand Institute for Plant and Food Research Limited Te Puke New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matthew J.","family":"Wylie","sequence":"additional","affiliation":[{"name":"The New Zealand Institute for Plant and Food Research Limited Nelson New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Elena","family":"Hilario","sequence":"additional","affiliation":[{"name":"The New Zealand Institute for Plant and Food Research Limited Te Puke New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Peter","family":"Ritchie","sequence":"additional","affiliation":[{"name":"School of Biological Sciences Victoria University of Wellington Wellington New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2764-8291","authenticated-orcid":false,"given":"Maren","family":"Wellenreuther","sequence":"additional","affiliation":[{"name":"The New Zealand Institute for Plant and Food Research Limited Nelson New Zealand"},{"name":"School of Biological Sciences University of Auckland Auckland New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2022,1,22]]},"reference":[{"key":"e_1_2_8_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.aquaculture.2011.11.043"},{"key":"e_1_2_8_3_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"},{"key":"e_1_2_8_4_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu638"},{"key":"e_1_2_8_5_1","unstructured":"Andrews S.(2017).FastQC: A quality control tool for high throughput sequence data. 2010."},{"key":"e_1_2_8_6_1","doi-asserted-by":"publisher","DOI":"10.1098\/rspb.2010.2479"},{"key":"e_1_2_8_7_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tree.2016.01.004"},{"key":"e_1_2_8_8_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.2517-6161.1995.tb02031.x"},{"issue":"6","key":"e_1_2_8_9_1","first-page":"1","article-title":"Physiological energetics","volume":"8","author":"Brett J. 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A. &Wellenreuther M.(2021).Evaluating new species for aquaculture: A genomic dissection of growth in the New Zealand silver trevally (Pseudocaranx georgianus).Evolutionary Applications Genomics for Aquaculture and Livestock Breeding.","DOI":"10.1111\/eva.13281"},{"key":"e_1_2_8_72_1","doi-asserted-by":"publisher","DOI":"10.1038\/nclimate2724"},{"key":"e_1_2_8_73_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.gene.2013.07.084"},{"key":"e_1_2_8_74_1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msx319"},{"key":"e_1_2_8_75_1","volume-title":"Molecular biology of the gene","author":"Watson J. 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