{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,17]],"date-time":"2025-09-17T15:40:23Z","timestamp":1758123623711},"reference-count":71,"publisher":"Wiley","issue":"2","license":[{"start":{"date-parts":[[2014,1,2]],"date-time":"2014-01-02T00:00:00Z","timestamp":1388620800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Geobiology"],"published-print":{"date-parts":[[2014,3]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>We designed a new culture method for neutrophilic iron\u2010oxidizing bacteria using liquid medium (i) to study the formation and mineralogical characteristics of biogenic iron oxides (<jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content>) and (ii) to apply <jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content> to various scientific and engineering applications. An iron\u2010oxidizing bacterium, <jats:italic>Mariprofundus ferrooxydan<\/jats:italic>s <jats:styled-content style=\"fixed-case\">PV<\/jats:styled-content>\u20101<jats:sup>T<\/jats:sup> (<jats:styled-content style=\"fixed-case\">ATCC<\/jats:styled-content>,<jats:styled-content style=\"fixed-case\"> BAA<\/jats:styled-content>\u20131020), was cultured using a set of diffusion chambers to prepare a broad anoxic\u2013oxic interface, upon which <jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content> formation is typically observed in natural environments. Iron oxide precipitates were generated in parallel with bacterial growth. A scanning electron microscopy analysis indicated that the morphological features of the iron oxide precipitates in the medium (<jats:italic>in vitro <\/jats:italic><jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content>) were similar to those of <jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content> collected from natural deep\u2010sea hydrothermal environments in the Northwest Eifuku Seamount field in the northern Mariana Arc (<jats:italic>in situ <\/jats:italic><jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content>). Further chemical speciation of both the <jats:italic>in vitro<\/jats:italic> and <jats:italic>in situ <\/jats:italic><jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content> was examined with X\u2010ray absorption fine structure (<jats:styled-content style=\"fixed-case\">XAFS<\/jats:styled-content>). A bulk <jats:styled-content style=\"fixed-case\">XAFS<\/jats:styled-content> analysis showed that the minerals in both <jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content> were mainly ferrihydrite and oligomeric stages of amorphous iron oxyhydroxides with edge\u2010sharing octahedral linkages. The amount of <jats:italic>in vitro <\/jats:italic><jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content> produced with the diffusion\u2010chamber method was greater than those produced previously with other culture methods, such as gel\u2010stabilized gradient and batch liquid culture methods. The larger yields of <jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content> produced with the new culture method will allow us to clarify in the future the mineralization mechanisms during bacterial growth and to examine the physicochemical properties of <jats:styled-content style=\"fixed-case\">BIOS<\/jats:styled-content>, such as their adsorption to and coprecipitation with various elements and substances.<\/jats:p>","DOI":"10.1111\/gbi.12073","type":"journal-article","created":{"date-parts":[[2014,1,2]],"date-time":"2014-01-02T08:53:02Z","timestamp":1388652782000},"page":"133-145","source":"Crossref","is-referenced-by-count":5,"title":["Characterization of biogenic iron oxides collected by the newly designed liquid culture method using diffusion chambers"],"prefix":"10.1111","volume":"12","author":[{"given":"S.","family":"Kikuchi","sequence":"first","affiliation":[{"name":"Department of Earth and Planetary Systems Science Graduate School of Science Hiroshima University Higashi\u2010Hiroshima Hiroshima Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"H.","family":"Makita","sequence":"additional","affiliation":[{"name":"Subsurface Geology Advanced Research (SUGAR) Project Institute of Biogeosciences Japan Agency for Marine\u2010Earth Science and Technology (JAMSTEC) Yokosuka Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"K.","family":"Takai","sequence":"additional","affiliation":[{"name":"Subsurface Geology Advanced Research (SUGAR) Project Institute of Biogeosciences Japan Agency for Marine\u2010Earth Science and Technology (JAMSTEC) Yokosuka Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"N.","family":"Yamaguchi","sequence":"additional","affiliation":[{"name":"National Institute for Agro\u2010Environmental Sciences Tsukuba Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Y.","family":"Takahashi","sequence":"additional","affiliation":[{"name":"Department of Earth and Planetary Systems Science Graduate School of Science Hiroshima University Higashi\u2010Hiroshima Hiroshima Japan"},{"name":"Key Laboratory of Petroleum Resources Chinese Academy of Science Lanzhou 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