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Clinical and microbiological examinations were performed at baseline and at 6\u00a0months post\u2010<jats:styled-content style=\"fixed-case\">SRP<\/jats:styled-content>. Six subgingival plaque samples per subject were analysed for the presence and levels of <jats:italic>Archaea<\/jats:italic> using quantitative polymerase chain reaction.<\/jats:p><\/jats:sec><jats:sec><jats:title>Results<\/jats:title><jats:p>Scaling and root planing alone or combined with <jats:styled-content style=\"fixed-case\">MTZ<\/jats:styled-content> or <jats:styled-content style=\"fixed-case\">MTZ<\/jats:styled-content>\u00a0+\u00a0<jats:styled-content style=\"fixed-case\">AMX<\/jats:styled-content> significantly reduced the prevalence of subjects colonized by <jats:italic>Archaea<\/jats:italic> at 6\u00a0months post\u2010therapy, without significant differences among groups (<jats:italic>P<\/jats:italic>\u00a0&gt;\u00a0.05). Both therapies led to a statistically significant decrease in the mean percentage of sites colonized by <jats:italic>Archaea<\/jats:italic> (<jats:italic>P<\/jats:italic>\u00a0&lt;\u00a0.05). The <jats:styled-content style=\"fixed-case\">MTZ<\/jats:styled-content> and <jats:styled-content style=\"fixed-case\">MTZ<\/jats:styled-content>\u00a0+\u00a0<jats:styled-content style=\"fixed-case\">AMX<\/jats:styled-content> group had a significantly lower mean number of sites colonized by <jats:italic>Archaea<\/jats:italic> and lower levels of these micro\u2010organisms at sites with probing depth \u22655\u00a0mm at 6\u00a0months compared with <jats:styled-content style=\"fixed-case\">SRP<\/jats:styled-content> group (<jats:italic>P<\/jats:italic>\u00a0&lt;\u00a0.05).<\/jats:p><\/jats:sec><jats:sec><jats:title>Conclusion<\/jats:title><jats:p>Periodontal treatments including adjunctive <jats:styled-content style=\"fixed-case\">MTZ<\/jats:styled-content> or <jats:styled-content style=\"fixed-case\">MTZ<\/jats:styled-content>\u00a0+\u00a0<jats:styled-content style=\"fixed-case\">AMX<\/jats:styled-content> are more effective than mechanical treatment alone in reducing the levels and prevalence of sites colonized by <jats:italic>Archaea<\/jats:italic> in subjects with chronic periodontitis.<\/jats:p><\/jats:sec>","DOI":"10.1111\/idh.12347","type":"journal-article","created":{"date-parts":[[2018,5,24]],"date-time":"2018-05-24T00:39:03Z","timestamp":1527122343000},"page":"569-575","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":11,"title":["Effects of different periodontal treatments in changing the prevalence and levels of <i>Archaea<\/i> present in the subgingival biofilm of subjects with periodontitis: A secondary analysis from a randomized controlled clinical trial"],"prefix":"10.1111","volume":"16","author":[{"given":"FS","family":"Ramiro","sequence":"first","affiliation":[{"name":"Department of Periodontology Dental Research Division Guarulhos University  Guarulhos Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"EAG","family":"de 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