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Differentially methylated genes were subsequently assessed for their <jats:styled-content style=\"fixed-case\">mRNA<\/jats:styled-content> expression. Data analyses (One\u2010way <jats:sc>anova<\/jats:sc>, Tukey's multiple comparisons tests and Mann\u2013Whitney tests) were performed using GraphPad Prism 6 software. <jats:italic>P<\/jats:italic> values\u00a0\u2264\u00a00.05 were considered statistically significant.<\/jats:p><\/jats:sec><jats:sec><jats:title>Results<\/jats:title><jats:p>Significant <jats:styled-content style=\"fixed-case\">DNA<\/jats:styled-content> hypermethylation was observed for <jats:italic><jats:styled-content style=\"fixed-case\">CXCL<\/jats:styled-content>3<\/jats:italic> and <jats:italic><jats:styled-content style=\"fixed-case\">FADD<\/jats:styled-content><\/jats:italic> gene promoters in <jats:styled-content style=\"fixed-case\">AP<\/jats:styled-content> lesions when compared to control tissues (<jats:italic>P\u00a0<\/jats:italic>&lt;<jats:italic>\u00a0<\/jats:italic>0.001) and among other genes (<jats:italic>P\u00a0<\/jats:italic>&lt;<jats:italic>\u00a0<\/jats:italic>0.05). In contrast, <jats:italic><jats:styled-content style=\"fixed-case\">IL<\/jats:styled-content>12B<\/jats:italic> and <jats:italic><jats:styled-content style=\"fixed-case\">IL<\/jats:styled-content>4R<\/jats:italic> were associated with significant hypomethylation in comparison to other genes (<jats:italic>P\u00a0<\/jats:italic>&lt;<jats:italic>\u00a0<\/jats:italic>0.05). <jats:italic><jats:styled-content style=\"fixed-case\">IL<\/jats:styled-content>12B, <jats:styled-content style=\"fixed-case\">IL<\/jats:styled-content>4R, <jats:styled-content style=\"fixed-case\">CXCL<\/jats:styled-content>3<\/jats:italic> and <jats:italic><jats:styled-content style=\"fixed-case\">FADD<\/jats:styled-content><\/jats:italic> had differential <jats:styled-content style=\"fixed-case\">mRNA<\/jats:styled-content> expression in <jats:styled-content style=\"fixed-case\">AP<\/jats:styled-content> lesions and controls (<jats:italic>P\u00a0<\/jats:italic>&lt;<jats:italic>\u00a0<\/jats:italic>0.001).<\/jats:p><\/jats:sec><jats:sec><jats:title>Conclusions<\/jats:title><jats:p>Differential methylation profiles of immune response\u2010related genes, such as <jats:italic><jats:styled-content style=\"fixed-case\">FADD<\/jats:styled-content><\/jats:italic>,<jats:italic> <jats:styled-content style=\"fixed-case\">CXCL<\/jats:styled-content>3<\/jats:italic>,<jats:italic> <jats:styled-content style=\"fixed-case\">IL<\/jats:styled-content>12B<\/jats:italic> and <jats:italic><jats:styled-content style=\"fixed-case\">IL<\/jats:styled-content>4R,<\/jats:italic> may have an influence on individual <jats:styled-content style=\"fixed-case\">AP<\/jats:styled-content> susceptibility and patient treatment outcomes, through their potential contributions to altered expression of disease\u2010relevant genes. Methylation and\/or genetic variations in additional genes may also contribute to the dynamics of <jats:styled-content style=\"fixed-case\">AP<\/jats:styled-content> development and should be considered in future studies.<\/jats:p><\/jats:sec>","DOI":"10.1111\/iej.12966","type":"journal-article","created":{"date-parts":[[2018,6,15]],"date-time":"2018-06-15T06:31:33Z","timestamp":1529044293000},"page":"5-12","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":21,"title":["<scp>DNA<\/scp> methylation profiles of immune response\u2010related genes in apical periodontitis"],"prefix":"10.1111","volume":"52","author":[{"given":"C.","family":"Wichnieski","sequence":"first","affiliation":[{"name":"Department of Endodontics Pontifical Catholic University of Parana Curitiba Brazil"},{"name":"Department of Endodontics School of Dentistry at Houston University of Texas Health Science Center at Houston Houston TX USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"K.","family":"Maheshwari","sequence":"additional","affiliation":[{"name":"Center for Craniofacial Research University of Texas School of Dentistry at Houston Houston TX USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7057-9850","authenticated-orcid":false,"given":"L. 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